Z. japonica Nagirizaki
Zjn_sc00008.1.g02160.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G30080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 598 155 597 e-111 112 39.8 47.8
Subject 670 247 669
Annot | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670
NR gb|EEC81202.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 598 2 575 0.0 104.8 80.4 85.5
Subject 627 11 622
Annot hypothetical protein OsI_24228 [Oryza sativa Indica Group]
IRGSP Os06t0685700-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 598 160 597 0.0 117.1 62.9 66.7
Subject 700 267 699
Annot
Sbicolor Sobic.010G236300.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 598 158 590 0.0 118.6 61.7 65.7
Subject 709 264 705
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g02160.1.sm.mkhc length: 598 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 9e-10 459-592
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 1.1e-33 184-267
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 22.219 513-591
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 3.5e-10 106-169
superfamily SSF101936 DNA-binding 4e-10 99-163
no_ID  
HMMPanther PTHR31384 FAMILY 4.9e-121 8-446
Seg seg seg NA 92-108
172-183
445-465
Pseudomolecule
Chromosome Start End Strand
191857834518581346+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker exon 903968 904486 . - . ID=Zjn_sc00008.1.g02160.1.sm.mkhc:exon:4
Zjn_sc00008.1 maker exon 904834 905759 . - . ID=Zjn_sc00008.1.g02160.1.sm.mkhc:exon:3
Zjn_sc00008.1 maker exon 905902 906222 . - . ID=Zjn_sc00008.1.g02160.1.sm.mkhc:exon:2
Zjn_sc00008.1 maker exon 906490 906969 . - . ID=Zjn_sc00008.1.g02160.1.sm.mkhc:exon:1

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