Z. japonica Nagirizaki
Zjn_sc00008.1.g02080.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G19640.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 292 107 269 6e-58 68.5 36 43.8
Subject 200 14 168
Annot | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family protein | chr4:10687441-10689449 REVERSE LENGTH=200
NR ref|XP_004966277.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 292 74 270 4e-75 69.2 50 54.1
Subject 202 1 167
Annot PREDICTED: ras-related protein RHN1-like [Setaria italica]
IRGSP Os06t0687100-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 292 107 270 8e-77 68.5 47.3 50.7
Subject 200 9 164
Annot
Sbicolor Sobic.010G237500.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 292 74 270 8e-79 68.5 50.7 54.5
Subject 200 1 167
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g02080.1.am.mk length: 292 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 7.5e-29 104-125
135-151
153-175
215-228
250-272
104-125
135-151
153-175
215-228
250-272
HMMPfam PF00071 Ras 5.2e-50 107-269
107-269
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 0.0085 109-291
109-291
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 5.3e-10 106-270
106-270
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 3e-64 107-275
107-275
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 2.5e-20 107-267
107-267
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 3.5e-14 107-275
107-275
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7.1e-48 107-272
107-272
no_ID  
Gene3D G3DSA:3.40.50.300 no description 2.7e-52 107-268
107-268
HMMPanther PTHR24073 FAMILY 1.9e-98 107-270
107-270
HMMPanther PTHR24073:SF132SUBFAMILY NOT 1.9e-98 107-270
107-270
ProfileScan PS51419 RAB 26.297 92-292
92-292
Pseudomolecule
Chromosome Start End Strand
191860741918608744+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker_non_over exon 876570 876737 . - . ID=Zjn_sc00008.1.g02080.1.am.mk:exon:5
Zjn_sc00008.1 maker_non_over exon 876828 876901 . - . ID=Zjn_sc00008.1.g02080.1.am.mk:exon:4
Zjn_sc00008.1 maker_non_over exon 877041 877089 . - . ID=Zjn_sc00008.1.g02080.1.am.mk:exon:3
Zjn_sc00008.1 maker_non_over exon 877210 877408 . - . ID=Zjn_sc00008.1.g02080.1.am.mk:exon:2
Zjn_sc00008.1 maker_non_over exon 877507 877895 . - . ID=Zjn_sc00008.1.g02080.1.am.mk:exon:1

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