Z. japonica Nagirizaki
Zjn_sc00008.1.g01490.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G51600.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 132 296 4e-58 92.6 35.6 39.9
Subject 302 82 257
Annot | Symbols: ZML2, TIFY2A, GATA28 | ZIM-LIKE 2 | chr1:19133176-19135252 FORWARD LENGTH=302
NR ref|XP_010227411.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 1 326 e-109 106.4 76.1 85
Subject 347 1 347
Annot PREDICTED: GATA transcription factor 24-like [Brachypodium distachyon]
IRGSP Os06t0698900-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 91 326 e-101 89.6 56.7 63.2
Subject 292 42 292
Annot
Sbicolor Sobic.010G249200.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 1 326 e-103 108 73 83.4
Subject 352 1 349
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g01490.1.sm.mkhc length: 326 aa.
IPR000679 Zinc finger, GATA-type
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00320 GATA 3.7e-13 262-297
HMMSmart SM00401 zinc 1.1e-09 256-308
PatternScan PS00344 GATA_ZN_FINGER_1 NA 262-289
IPR010399 Tify
HMMPfam PF06200 tify 1.7e-13 128-161
HMMSmart SM00979 no description 9.4e-13 127-162
ProfileScan PS51320 TIFY 15.142 127-162
IPR010402 CCT domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF06203 CCT 1.6e-18 187-230
ProfileScan PS51017 CCT 13.334 187-229
IPR013088 Zinc finger, NHR/GATA-type
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:3.30.50.10 no description 9.6e-13 261-297
no_ID  
Coil coil coiled-coil NA 33-82
HMMPanther PTHR10071 TRANSCRIPTION 3.8e-27 180-296
HMMPanther PTHR10071:SF128SUBFAMILY NOT 3.8e-27 180-296
Seg seg seg NA 25-40
48-96
103-110
superfamily SSF57716 Glucocorticoid 1.2e-11 256-297
Pseudomolecule
Chromosome Start End Strand
191884806818851412-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker exon 633902 634357 . + . ID=Zjn_sc00008.1.g01490.1.sm.mkhc:exon:1
Zjn_sc00008.1 maker exon 634461 634544 . + . ID=Zjn_sc00008.1.g01490.1.sm.mkhc:exon:2
Zjn_sc00008.1 maker exon 634655 634767 . + . ID=Zjn_sc00008.1.g01490.1.sm.mkhc:exon:3
Zjn_sc00008.1 maker exon 635182 635310 . + . ID=Zjn_sc00008.1.g01490.1.sm.mkhc:exon:4
Zjn_sc00008.1 maker exon 635837 635942 . + . ID=Zjn_sc00008.1.g01490.1.sm.mkhc:exon:5
Zjn_sc00008.1 maker exon 636858 637246 . + . ID=Zjn_sc00008.1.g01490.1.sm.mkhc:exon:6

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