Z. japonica Nagirizaki
Zjn_sc00007.1.g12260.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G17720.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 579 25 532 e-104 86.5 38.3 51.5
Subject 501 8 499
Annot | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=501
NR ref|XP_008644089.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 579 1 532 e-173 90.7 58.9 68
Subject 525 1 523
Annot PREDICTED: hypothetical protein isoform X1 [Zea mays]
IRGSP Os02t0224200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 579 36 532 e-103 90.7 37.1 50.3
Subject 525 31 523
Annot
Sbicolor Sobic.004G215800.2.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 579 7 532 e-176 92.4 58.5 66.5
Subject 535 4 533
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g12260.1.am.mk length: 579 aa.
IPR000009 Protein phosphatase 2A, regulatory subunit PR55
method AccNumber shortName E-value location
Cellular Component GO:0000159 protein phosphatase type 2A complex    
Biological Process GO:0007165 signal transduction    
Molecular Function GO:0008601 protein phosphatase type 2A regulator activity    
FPrintScan PR00600 PP2APR55 6.6e-69 70-90
149-177
237-264
265-292
293-321
322-349
399-425
503-532
70-90
149-177
237-264
265-292
293-321
322-349
399-425
503-532
HMMPIR PIRSF037309 Serine/threonine-protein 8.9e-125 27-536
27-536
HMMPanther PTHR11871 PROTEIN 1.3e-148 1-539
1-539
IPR001680 WD40 repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.12 403-426
403-426
HMMSmart SM00320 WD40 5.4 51-91
133-173
336-374
386-426
495-533
51-91
133-173
336-374
386-426
495-533
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 8.3e-25 494-531
494-531
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
superfamily SSF50978 WD40 1.3e-23 53-532
53-532
no_ID  
HMMPanther PTHR11871:SF0 PROTEIN 1.3e-148 1-539
1-539
Seg seg seg NA 2-32
475-489
2-32
475-489
Pseudomolecule
Chromosome Start End Strand
71484328514846720-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 5409672 5409858 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:1
Zjn_sc00007.1 maker_non_over exon 5409963 5410066 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 5410142 5410249 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:3
Zjn_sc00007.1 maker_non_over exon 5410322 5410441 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:4
Zjn_sc00007.1 maker_non_over exon 5410542 5410765 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:5
Zjn_sc00007.1 maker_non_over exon 5410828 5410946 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:6
Zjn_sc00007.1 maker_non_over exon 5411073 5411196 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:7
Zjn_sc00007.1 maker_non_over exon 5411315 5411441 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:8
Zjn_sc00007.1 maker_non_over exon 5411513 5411563 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:9
Zjn_sc00007.1 maker_non_over exon 5411664 5411755 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:10
Zjn_sc00007.1 maker_non_over exon 5411838 5411963 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:11
Zjn_sc00007.1 maker_non_over exon 5412045 5412127 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:12
Zjn_sc00007.1 maker_non_over exon 5412242 5412359 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:13
Zjn_sc00007.1 maker_non_over exon 5412951 5413107 . + . ID=Zjn_sc00007.1.g12260.1.am.mk:exon:14

Top