Z. japonica Nagirizaki
Zjn_sc00007.1.g12230.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G61380.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
183 |
23 |
153 |
3e-54 |
337.7 |
53 |
60.1 |
| Subject |
618 |
13 |
143 |
|
| Annot |
| Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618 |
| NR |
gb|ADX60159.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
183 |
1 |
153 |
6e-74 |
281.4 |
74.3 |
76 |
| Subject |
515 |
1 |
148 |
|
| Annot |
pseudoARR-B transcription factor [Zea mays] gi|413923083|gb|AFW63015.1| two-component response regulator-like PRR1 [Zea mays] |
| IRGSP |
Os02t0618200-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
183 |
1 |
153 |
6e-71 |
283.1 |
74.3 |
76 |
| Subject |
518 |
1 |
152 |
|
| Annot |
|
| Sbicolor |
Sobic.004G216700.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
183 |
21 |
153 |
8e-72 |
286.3 |
68.3 |
69.9 |
| Subject |
524 |
26 |
158 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00007.1.g12230.1.sm.mkhc |
length: 183 aa. |
| IPR001789 |
Signal transduction response regulator, receiver domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000156 |
phosphorelay response regulator activity |
|
|
| Biological Process |
GO:0000160 |
phosphorelay signal transduction system |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF00072 |
Response_reg |
3.5e-16 |
31-142 |
| HMMSmart |
SM00448 |
cheY-homologous |
9.6e-10 |
29-144 |
| ProfileScan |
PS50110 |
RESPONSE_REGULATORY |
22.725 |
30-148 |
| IPR011006 |
CheY-like superfamily |
| superfamily |
SSF52172 |
CheY-like |
2.1e-23 |
26-155 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
8.2e-26 |
28-156 |
| HMMPanther |
PTHR26402 |
RESPONSE |
7.9e-26 |
17-163 |
| HMMPanther |
PTHR26402:SF256TWO-COMPONENT |
RESPONSE |
7.9e-26 |
17-163 |
| Seg |
seg |
seg |
NA |
2-19 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 14865964 | 14868868 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00007.1 |
maker |
exon |
5387524 |
5387534 |
. |
- |
. |
ID=Zjn_sc00007.1.g12230.1.sm.mkhc:exon:5 |
| Zjn_sc00007.1 |
maker |
exon |
5389110 |
5389191 |
. |
- |
. |
ID=Zjn_sc00007.1.g12230.1.sm.mkhc:exon:4 |
| Zjn_sc00007.1 |
maker |
exon |
5389686 |
5389819 |
. |
- |
. |
ID=Zjn_sc00007.1.g12230.1.sm.mkhc:exon:3 |
| Zjn_sc00007.1 |
maker |
exon |
5389913 |
5390074 |
. |
- |
. |
ID=Zjn_sc00007.1.g12230.1.sm.mkhc:exon:2 |
| Zjn_sc00007.1 |
maker |
exon |
5390266 |
5390428 |
. |
- |
. |
ID=Zjn_sc00007.1.g12230.1.sm.mkhc:exon:1 |