Z. japonica Nagirizaki
Zjn_sc00007.1.g12100.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G20420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 381 2 378 0.0 110.5 81.9 92.4
Subject 421 1 418
Annot | Symbols: | ATP citrate lyase (ACL) family protein | chr2:8805574-8807858 FORWARD LENGTH=421
NR ref|XP_002452471.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 381 1 381 0.0 110.8 95.5 98.7
Subject 422 1 422
Annot hypothetical protein SORBIDRAFT_04g026360 [Sorghum bicolor] gi|241932302|gb|EES05447.1| hypothetical protein SORBIDRAFT_04g026360 [Sorghum bicolor]
IRGSP Os02t0621700-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 381 1 381 0.0 110.8 92.4 97.4
Subject 422 1 422
Annot
Sbicolor Sobic.004G218600.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 381 1 381 0.0 110.8 95.5 98.7
Subject 422 1 422
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g12100.1.sm.mkhc length: 381 aa.
IPR005809 Succinyl-CoA synthetase, beta subunit
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPanther PTHR11815 SUCCINYL-COA 9.7e-190 12-379
IPR011761 ATP-grasp fold
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0046872 metal ion binding    
ProfileScan PS50975 ATP_GRASP 8.915 36-262
IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type
HMMPfam PF08442 ATP-grasp_2 4.9e-62 29-238
IPR013815 ATP-grasp fold, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0005524 ATP binding    
Gene3D G3DSA:3.30.1490.20 no description 5e-23 48-129
IPR013816 ATP-grasp fold, subdomain 2
Molecular Function GO:0005524 ATP binding    
Gene3D G3DSA:3.30.470.20 no description 3.1e-55 130-274
IPR016102 Succinyl-CoA synthetase-like
Gene3D G3DSA:3.40.50.261 no description 1.6e-11 275-333
334-377
superfamily SSF52210 Succinyl-CoA 4.2e-32 274-380
IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site
PatternScan PS01217 SUCCINYL_COA_LIG_3 NA 292-316
no_ID  
HMMPanther PTHR11815:SF0 SUBFAMILY 9.7e-190 12-379
Seg seg seg NA 240-251
superfamily SSF56059 Glutathione 1.5e-70 27-273
Pseudomolecule
Chromosome Start End Strand
71492413314929494+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker exon 5326898 5327259 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:11
Zjn_sc00007.1 maker exon 5327355 5327426 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:10
Zjn_sc00007.1 maker exon 5328601 5328765 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:9
Zjn_sc00007.1 maker exon 5329122 5329256 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:8
Zjn_sc00007.1 maker exon 5329327 5329479 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:7
Zjn_sc00007.1 maker exon 5329579 5329653 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:6
Zjn_sc00007.1 maker exon 5330462 5330539 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:5
Zjn_sc00007.1 maker exon 5330854 5330918 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:4
Zjn_sc00007.1 maker exon 5331444 5331555 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:3
Zjn_sc00007.1 maker exon 5331854 5331964 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:2
Zjn_sc00007.1 maker exon 5332076 5332259 . - . ID=Zjn_sc00007.1.g12100.1.sm.mkhc:exon:1

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