Z. japonica Nagirizaki
Zjn_sc00007.1.g11910.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G37040.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
701 |
4 |
700 |
0.0 |
103.4 |
70.8 |
83.9 |
| Subject |
725 |
27 |
724 |
|
| Annot |
| Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725 |
| NR |
ref|NP_001105334.2| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
701 |
1 |
701 |
0.0 |
100.3 |
94.6 |
97.7 |
| Subject |
703 |
1 |
701 |
|
| Annot |
phenylalanine/tyrosine ammonia-lyase [Zea mays] gi|219886341|gb|ACL53545.1| unknown [Zea mays] gi|413937858|gb|AFW72409.1| phenylalanine ammonia lyase-like protein [Zea mays] |
| IRGSP |
Os02t0626100-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
701 |
1 |
701 |
0.0 |
100 |
92 |
96.4 |
| Subject |
701 |
1 |
701 |
|
| Annot |
|
| Sbicolor |
Sobic.004G220300.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
701 |
1 |
701 |
0.0 |
100.4 |
94.6 |
97.9 |
| Subject |
704 |
1 |
701 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00007.1.g11910.1.sm.mkhc |
length: 701 aa. |
| IPR001106 |
Aromatic amino acid lyase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| Molecular Function |
GO:0016841 |
ammonia-lyase activity |
|
|
| HMMPfam |
PF00221 |
Lyase_aromatic |
5.7e-172 |
42-535 |
| IPR005922 |
Phenylalanine ammonia-lyase |
| Cellular Component |
GO:0005737 |
cytoplasm |
|
|
| Biological Process |
GO:0006559 |
L-phenylalanine catabolic process |
|
|
| Molecular Function |
GO:0016841 |
ammonia-lyase activity |
|
|
| HMMTigr |
TIGR01226 |
phe_am_lyase: |
0 |
11-691 |
| IPR008948 |
L-Aspartase-like |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| superfamily |
SSF48557 |
L-aspartase-like |
9.4e-259 |
10-701 |
| IPR022313 |
Phenylalanine/histidine ammonia-lyases, active site |
| Molecular Function |
GO:0016841 |
ammonia-lyase activity |
|
|
| PatternScan |
PS00488 |
PAL_HISTIDASE |
NA |
185-201 |
| IPR023144 |
Phenylalanine ammonia-lyase, shielding domain |
| Gene3D |
G3DSA:1.10.274.20 |
no description |
3.5e-47 |
522-635 |
| IPR024083 |
Fumarase/histidase, N-terminal |
| Gene3D |
G3DSA:1.10.275.10 |
no description |
4.2e-86 |
10-248 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.200.10 |
no description |
9.7e-134 |
636-690 |
| HMMPanther |
PTHR32364 |
FAMILY |
0 |
6-701 |
| HMMPanther |
PTHR32364:SF2 |
SUBFAMILY |
0 |
6-701 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 15038703 | 15041669 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00007.1 |
maker |
exon |
5214723 |
5215197 |
. |
+ |
. |
ID=Zjn_sc00007.1.g11910.1.sm.mkhc:exon:1 |
| Zjn_sc00007.1 |
maker |
exon |
5215875 |
5217689 |
. |
+ |
. |
ID=Zjn_sc00007.1.g11910.1.sm.mkhc:exon:2 |