Z. japonica Nagirizaki
Zjn_sc00007.1.g11880.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G37040.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 913 238 913 0.0 79.4 57 64.1
Subject 725 28 725
Annot | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725
NR ref|XP_004953157.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 913 221 912 0.0 78.2 72.5 74
Subject 714 1 713
Annot PREDICTED: phenylalanine ammonia-lyase-like [Setaria italica]
IRGSP Os02t0627100-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 913 221 913 0.0 78.1 72.3 73.9
Subject 713 1 713
Annot
Sbicolor Sobic.004G220600.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 913 220 913 0.0 78.5 72.4 74
Subject 717 3 717
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g11880.1.am.mk length: 913 aa.
IPR001106 Aromatic amino acid lyase
method AccNumber shortName E-value location
Biological Process GO:0009058 biosynthetic process    
Molecular Function GO:0016841 ammonia-lyase activity    
HMMPfam PF00221 Lyase_aromatic 1.7e-164 275-742
275-742
IPR005922 Phenylalanine ammonia-lyase
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006559 L-phenylalanine catabolic process    
Molecular Function GO:0016841 ammonia-lyase activity    
HMMTigr TIGR01226 phe_am_lyase: 0 244-903
244-903
IPR008948 L-Aspartase-like
Molecular Function GO:0003824 catalytic activity    
superfamily SSF48557 L-aspartase-like 1.7e-254 243-913
243-913
IPR022313 Phenylalanine/histidine ammonia-lyases, active site
Molecular Function GO:0016841 ammonia-lyase activity    
PatternScan PS00488 PAL_HISTIDASE NA 415-431
415-431
IPR023144 Phenylalanine ammonia-lyase, shielding domain
Gene3D G3DSA:1.10.274.20 no description 2.6e-43 745-847
745-847
IPR024083 Fumarase/histidase, N-terminal
Gene3D G3DSA:1.10.275.10 no description 3.1e-90 243-478
243-478
no_ID  
Gene3D G3DSA:1.20.200.10 no description 4.4e-126 848-902
848-902
HMMPanther PTHR32364 FAMILY 0 227-913
227-913
HMMPanther PTHR32364:SF2 SUBFAMILY 0 227-913
227-913
Seg seg seg NA 130-147
285-298
130-147
285-298
Pseudomolecule
Chromosome Start End Strand
71506005215063846-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 5192546 5192732 . + . ID=Zjn_sc00007.1.g11880.1.am.mk:exon:1
Zjn_sc00007.1 maker_non_over exon 5192772 5192864 . + . ID=Zjn_sc00007.1.g11880.1.am.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 5193111 5193199 . + . ID=Zjn_sc00007.1.g11880.1.am.mk:exon:3
Zjn_sc00007.1 maker_non_over exon 5193774 5194041 . + . ID=Zjn_sc00007.1.g11880.1.am.mk:exon:4
Zjn_sc00007.1 maker_non_over exon 5194176 5195614 . + . ID=Zjn_sc00007.1.g11880.1.am.mk:exon:5
Zjn_sc00007.1 maker_non_over exon 5195645 5195794 . + . ID=Zjn_sc00007.1.g11880.1.am.mk:exon:6
Zjn_sc00007.1 maker_non_over exon 5195825 5196340 . + . ID=Zjn_sc00007.1.g11880.1.am.mk:exon:7

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