Z. japonica Nagirizaki
Zjn_sc00007.1.g11820.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G30080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 692 6 690 e-180 96.8 52.2 63.7
Subject 670 3 668
Annot | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670
NR ref|XP_004953169.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 692 1 692 0.0 100.6 83.1 88.6
Subject 696 1 696
Annot PREDICTED: auxin response factor 8-like [Setaria italica]
IRGSP Os02t0628600-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 692 1 692 0.0 98.4 80.5 86.3
Subject 681 1 681
Annot
Sbicolor Sobic.004G221400.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 692 1 692 0.0 102.3 87.1 90.9
Subject 708 1 708
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g11820.1.sm.mkhc length: 692 aa.
IPR003340 B3 DNA binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMPfam PF02362 B3 5.7e-21 121-222
HMMSmart SM01019 B3 4.8e-21 121-223
ProfileScan PS50863 B3 12.802 121-223
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 7.6e-34 271-354
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 13.929 611-685
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 4e-36 116-224
superfamily SSF101936 DNA-binding 6.4e-30 104-224
no_ID  
HMMPanther PTHR31384 FAMILY 6.9e-188 14-502
Seg seg seg NA 228-235
298-307
408-439
567-579
Pseudomolecule
Chromosome Start End Strand
71508724615089530+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker exon 5166862 5166919 . - . ID=Zjn_sc00007.1.g11820.1.sm.mkhc:exon:3
Zjn_sc00007.1 maker exon 5167023 5167981 . - . ID=Zjn_sc00007.1.g11820.1.sm.mkhc:exon:2
Zjn_sc00007.1 maker exon 5168085 5169146 . - . ID=Zjn_sc00007.1.g11820.1.sm.mkhc:exon:1

Top