Z. japonica Nagirizaki
Zjn_sc00007.1.g11580.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G02920.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 198 30 180 4e-26 140.4 33.8 49.5
Subject 278 3 177
Annot | Symbols: RPA32B, ATRPA32B | Replication protein A, subunit RPA32 | chr3:651844-654189 REVERSE LENGTH=278
NR ref|XP_012703888.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 198 32 198 3e-54 144.9 64.1 74.2
Subject 287 15 237
Annot PREDICTED: LOW QUALITY PROTEIN: replication protein A 32 kDa subunit B-like [Setaria italica]
IRGSP Os02t0633400-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 198 35 198 3e-49 150.5 56.1 68.7
Subject 298 21 248
Annot
Sbicolor Sobic.004G224100.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 198 32 195 4e-57 142.4 61.6 68.7
Subject 282 17 229
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g11580.1.am.mkhc length: 198 aa.
IPR012340 Nucleic acid-binding, OB-fold
method AccNumber shortName E-value location
Gene3D G3DSA:2.40.50.140 no description 1.4e-05 66-139
143-170
superfamily SSF50249 Nucleic 1.5e-21 69-170
no_ID  
HMMPanther PTHR13989 REPLICATION 4.1e-34 27-170
HMMPanther PTHR13989:SF7 SUBFAMILY 4.1e-34 27-170
Seg seg seg NA 8-37
55-69
Pseudomolecule
Chromosome Start End Strand
71522045915223641-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker exon 5032751 5032939 . + . ID=Zjn_sc00007.1.g11580.1.am.mkhc:exon:1
Zjn_sc00007.1 maker exon 5033041 5033151 . + . ID=Zjn_sc00007.1.g11580.1.am.mkhc:exon:2
Zjn_sc00007.1 maker exon 5033615 5033751 . + . ID=Zjn_sc00007.1.g11580.1.am.mkhc:exon:3
Zjn_sc00007.1 maker exon 5034625 5034703 . + . ID=Zjn_sc00007.1.g11580.1.am.mkhc:exon:4
Zjn_sc00007.1 maker exon 5034948 5035133 . + . ID=Zjn_sc00007.1.g11580.1.am.mkhc:exon:5
Zjn_sc00007.1 maker exon 5035562 5035701 . + . ID=Zjn_sc00007.1.g11580.1.am.mkhc:exon:6
Zjn_sc00007.1 maker exon 5035760 5035933 . + . ID=Zjn_sc00007.1.g11580.1.am.mkhc:exon:7

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