Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00007.1.g10470.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00007.1)

BLAST

TAIR10	AT4G17500.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	280	1	258	2e-44	95.7	42.9	54.6
		Subject	268	3	259
		Annot	\| Symbols: ATERF-1, ERF-1 \| ethylene responsive element binding factor 1 \| chr4:9759405-9760211 FORWARD LENGTH=268
NR	ref\|XP_004953322.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	280	1	280	e-100	105.7	87.1	90.7
		Subject	296	1	296
		Annot	PREDICTED: ethylene-responsive transcription factor 2-like [Setaria italica]
IRGSP	Os02t0654700-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	280	1	280	7e-89	108.2	81.8	86.4
		Subject	303	1	303
		Annot
Sbicolor	Sobic.004G297100.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	280	1	280	5e-94	111.1	82.5	86.4
		Subject	311	2	311
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001471	AP2/ERF domain
Zjn_sc00007.1.g10470.1.am.mk				length: 280 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003700	sequence-specific DNA binding transcription factor activity
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
FPrintScan	PR00367	ETHRSPELEMNT	5.4e-13	131-142 170-190 131-142 170-190
Gene3D	G3DSA:3.30.730.10	no description	2.8e-30	129-188 129-188
HMMPfam	PF00847	AP2	2.7e-16	130-180 130-180
HMMSmart	SM00380	DNA-binding	1.1e-36	130-194 130-194
ProfileScan	PS51032	AP2_ERF	23.749	130-188 130-188
IPR016177	DNA-binding domain
Molecular Function	GO:0003677	DNA binding
superfamily	SSF54171	DNA-binding	4.7e-25	129-191 129-191
no_ID
HMMPanther	PTHR31190	FAMILY	1.8e-24	53-251 53-251
HMMPanther	PTHR31190:SF0	SUBFAMILY	1.8e-24	53-251 53-251
Seg	seg	seg	NA	102-122 164-177 196-207 213-232 240-268 102-122 164-177 196-207 213-232 240-268

Pseudomolecule

Chromosome	Start	End	Strand
7	15706257	15707099	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00007.1	maker_non_over	exon	4549293	4550135	.	+	.	ID=Zjn_sc00007.1.g10470.1.am.mk:exon:1