Z. japonica Nagirizaki
Zjn_sc00007.1.g10310.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G44940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 263 72 249 2e-40 112.2 36.9 44.5
Subject 295 89 295
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:18537294-18538181 FORWARD LENGTH=295
NR ref|XP_008646010.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 263 1 263 7e-65 105.3 65.8 73.4
Subject 277 1 277
Annot PREDICTED: ethylene-responsive transcription factor ERF038-like [Zea mays] gi|413938084|gb|AFW72635.1| putative AP2/EREBP transcription factor superfamily protein [Zea mays] gi|645167332|gb|AIB05310.1| AP2-EREBP transcription factor, partial [Zea mays]
IRGSP Os02t0656600-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 263 1 263 9e-50 109.1 65.8 76
Subject 287 1 287
Annot
Sbicolor Sobic.004G295700.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 263 1 263 8e-49 108 67.3 74.1
Subject 284 1 284
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g10310.1.sm.mk length: 263 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 5.8e-10 83-94
105-121
83-94
105-121
Gene3D G3DSA:3.30.730.10 no description 1.9e-30 82-140
82-140
HMMPfam PF00847 AP2 1.5e-15 81-131
81-131
HMMSmart SM00380 DNA-binding 3.9e-35 82-145
82-145
ProfileScan PS51032 AP2_ERF 23.406 82-139
82-139
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 3.2e-22 81-142
81-142
no_ID  
HMMPanther PTHR31985 FAMILY 3.4e-78 7-251
7-251
Seg seg seg NA 43-57
84-96
118-128
154-198
206-225
227-233
43-57
84-96
118-128
154-198
206-225
227-233
Pseudomolecule
Chromosome Start End Strand
71576719315767984+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 4488408 4489199 . - . ID=Zjn_sc00007.1.g10310.1.sm.mk:exon:1

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