Z. japonica Nagirizaki
Zjn_sc00007.1.g09550.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G02070.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 166 22 157 5e-74 362.6 69.3 75.9
Subject 602 60 194
Annot | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain 5 | chr2:505523-509154 FORWARD LENGTH=602
NR gb|ACL52865.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 166 23 157 3e-82 350.6 77.7 80.7
Subject 582 74 208
Annot unknown [Zea mays]
IRGSP Os02t0672100-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 166 23 157 2e-82 370.5 76.5 79.5
Subject 615 75 209
Annot
Sbicolor Sobic.004G285400.3.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 166 23 157 4e-84 357.8 77.1 80.7
Subject 594 71 205
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g09550.1.sm.mkhc length: 166 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 45-65
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.094 43-65
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00076 42-65
108-141
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.6e+02 43-65
85-115
120-140
IPR022755 Zinc finger, double-stranded RNA binding
HMMPfam PF12171 zf-C2H2_jaz 1.4e-05 42-65
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 5.4e-110 23-157
HMMPanther PTHR10593:SF17 SUBFAMILY 5.4e-110 23-157
superfamily SSF57667 C2H2 4.1e-08 41-141
Pseudomolecule
Chromosome Start End Strand
71608517916087453+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker exon 4168939 4169369 . - . ID=Zjn_sc00007.1.g09550.1.sm.mkhc:exon:3
Zjn_sc00007.1 maker exon 4170929 4170956 . - . ID=Zjn_sc00007.1.g09550.1.sm.mkhc:exon:2
Zjn_sc00007.1 maker exon 4171172 4171213 . - . ID=Zjn_sc00007.1.g09550.1.sm.mkhc:exon:1

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