Z. japonica Nagirizaki
Zjn_sc00007.1.g09250.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G52020.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 59 235 1e-34 97.9 40.1 48.5
Subject 232 59 232
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:21124192-21124890 REVERSE LENGTH=232
NR ref|XP_004953436.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 24 237 8e-63 116.9 72.2 74.7
Subject 277 44 277
Annot PREDICTED: ethylene-responsive transcription factor ERF027-like [Setaria italica]
IRGSP Os02t0676800-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 1 237 2e-63 110.1 72.2 76.4
Subject 261 4 261
Annot
Sbicolor Sobic.004G283300.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 45 237 3e-54 127.4 65.8 66.7
Subject 302 78 302
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g09250.1.sm.mk length: 237 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Gene3D G3DSA:3.30.730.10 no description 1.6e-21 65-115
65-115
HMMPfam PF00847 AP2 1e-13 65-112
65-112
HMMSmart SM00380 DNA-binding 7.2e-21 64-123
64-123
ProfileScan PS51032 AP2_ERF 17.846 64-121
64-121
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.7e-15 63-116
63-116
no_ID  
HMMPanther PTHR31985 FAMILY 2.2e-36 56-211
56-211
Seg seg seg NA 36-56
96-109
114-137
165-176
36-56
96-109
114-137
165-176
Pseudomolecule
Chromosome Start End Strand
71623050616231671+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 4024721 4025089 . - . ID=Zjn_sc00007.1.g09250.1.sm.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 4025542 4025886 . - . ID=Zjn_sc00007.1.g09250.1.sm.mk:exon:1

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