Z. japonica Nagirizaki
Zjn_sc00007.1.g09230.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G25470.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 107 326 3e-46 66.3 32.8 44.5
Subject 216 6 216
Annot | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE binding factor 2 | chr4:13015436-13016086 REVERSE LENGTH=216
NR ref|XP_004953437.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 102 326 4e-90 76.1 55.8 60.1
Subject 248 18 248
Annot PREDICTED: dehydration-responsive element-binding protein 1G-like [Setaria italica]
IRGSP Os02t0677300-02_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 103 326 2e-79 68.7 51.5 55.5
Subject 224 1 224
Annot
Sbicolor Sobic.004G283200.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 326 103 326 8e-75 69.9 53.1 56.4
Subject 228 1 228
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g09230.1.am.mk length: 326 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1.6e-07 156-167
178-194
156-167
178-194
Gene3D G3DSA:3.30.730.10 no description 1.2e-28 155-214
155-214
HMMPfam PF00847 AP2 2.4e-15 154-204
154-204
HMMSmart SM00380 DNA-binding 2.6e-27 155-218
155-218
ProfileScan PS51032 AP2_ERF 21.588 155-212
155-212
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 1.1e-22 154-215
154-215
no_ID  
HMMPanther PTHR31839 FAMILY 5.8e-94 101-326
101-326
HMMPanther PTHR31839:SF0 SUBFAMILY 5.8e-94 101-326
101-326
Seg seg seg NA 2-15
26-41
113-130
191-207
231-239
305-319
2-15
26-41
113-130
191-207
231-239
305-319
Pseudomolecule
Chromosome Start End Strand
71623641116239361+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 4017031 4018088 . - . ID=Zjn_sc00007.1.g09230.1.am.mk:exon:3
Zjn_sc00007.1 maker_non_over exon 4018271 4018330 . - . ID=Zjn_sc00007.1.g09230.1.am.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 4019810 4019981 . - . ID=Zjn_sc00007.1.g09230.1.am.mk:exon:1

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