Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00007.1.g09060.1.sm.mkhc ( /TE )

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00007.1)

BLAST

TAIR10	AT1G63970.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	226	67	226	2e-80	102.2	61.9	67.3
		Subject	231	72	231
		Annot	\| Symbols: ISPF, MECPS \| isoprenoid F \| chr1:23738923-23740336 REVERSE LENGTH=231
NR	ref\|NP_001144085.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	226	1	226	e-107	99.6	89.8	92.9
		Subject	225	1	225
		Annot	uncharacterized protein LOC100276918 [Zea mays] gi\|195636712\|gb\|ACG37824.1\| hypothetical protein [Zea mays] gi\|413938253\|gb\|AFW72804.1\| hypothetical protein ZEAMMB73_131719 [Zea mays]
IRGSP	Os02t0680600-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	226	1	226	e-102	121.7	88.1	92.9
		Subject	275	54	275
		Annot
Sbicolor	Sobic.004G281900.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	226	1	226	e-110	119.9	90.3	92.9
		Subject	271	47	271
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Zjn_sc00007.1.g09060.1.sm.mkhc				length: 226 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Biological Process	GO:0016114	terpenoid biosynthetic process
Gene3D	G3DSA:3.30.1330.50	no description	9.4e-67	69-225
HAMAP	MF_00107	IspF	32.277	70-225
HMMPfam	PF02542	YgbB	2.7e-60	70-225
HMMTigr	TIGR00151	ispF:	2.3e-58	71-225
superfamily	SSF69765	IpsF-like	2.2e-61	70-224
IPR020555	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site
Molecular Function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
PatternScan	PS01350	ISPF	NA	104-119
no_ID
HMMPanther	PTHR32125	FAMILY	4.4e-51	69-226
HMMPanther	PTHR32125:SF0	SUBFAMILY	4.4e-51	69-226
Seg	seg	seg	NA	5-17 57-69

Pseudomolecule

Chromosome	Start	End	Strand
7	16294235	16296232	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00007.1	maker	exon	3960160	3960475	.	+	.	ID=Zjn_sc00007.1.g09060.1.sm.mkhc:exon:1
Zjn_sc00007.1	maker	exon	3960570	3960700	.	+	.	ID=Zjn_sc00007.1.g09060.1.sm.mkhc:exon:2
Zjn_sc00007.1	maker	exon	3961524	3962157	.	+	.	ID=Zjn_sc00007.1.g09060.1.sm.mkhc:exon:3