Z. japonica Nagirizaki
Zjn_sc00007.1.g09020.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G45650.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 258 1 255 2e-77 97.7 57 73.6
Subject 252 1 251
Annot | Symbols: AGL6 | AGAMOUS-like 6 | chr2:18804453-18806291 FORWARD LENGTH=252
NR ref|XP_004953459.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 258 1 255 e-125 98.1 85.3 90.7
Subject 253 1 252
Annot PREDICTED: MADS-box transcription factor 6 [Setaria italica]
IRGSP Os02t0682200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 258 1 255 e-114 96.9 80.2 87.2
Subject 250 1 249
Annot
Sbicolor Sobic.004G281000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 258 1 255 e-125 98.8 84.9 91.5
Subject 255 1 254
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g09020.1.sm.mk length: 258 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 7.9e-33 3-23
23-38
38-59
3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 2.8e-29 9-58
9-58
HMMSmart SM00432 no description 1.8e-41 1-60
1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
3-57
ProfileScan PS50066 MADS_BOX_2 33.571 1-61
1-61
superfamily SSF55455 SRF-like 2.2e-33 2-94
2-94
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 8.5e-30 78-171
78-171
ProfileScan PS51297 K_BOX 17.380 86-176
86-176
no_ID  
Coil coil coiled-coil NA 120-166
120-166
HMMPanther PTHR11945 MADS 9.9e-105 1-242
1-242
HMMPanther PTHR11945:SF19 MADS 9.9e-105 1-242
1-242
Seg seg seg NA 184-193
184-193
Pseudomolecule
Chromosome Start End Strand
71630699416316261+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 3940131 3940145 . - . ID=Zjn_sc00007.1.g09020.1.sm.mk:exon:8
Zjn_sc00007.1 maker_non_over exon 3944829 3944922 . - . ID=Zjn_sc00007.1.g09020.1.sm.mk:exon:7
Zjn_sc00007.1 maker_non_over exon 3945038 3945240 . - . ID=Zjn_sc00007.1.g09020.1.sm.mk:exon:6
Zjn_sc00007.1 maker_non_over exon 3945406 3945447 . - . ID=Zjn_sc00007.1.g09020.1.sm.mk:exon:5
Zjn_sc00007.1 maker_non_over exon 3945856 3945955 . - . ID=Zjn_sc00007.1.g09020.1.sm.mk:exon:4
Zjn_sc00007.1 maker_non_over exon 3946137 3946198 . - . ID=Zjn_sc00007.1.g09020.1.sm.mk:exon:3
Zjn_sc00007.1 maker_non_over exon 3947171 3947249 . - . ID=Zjn_sc00007.1.g09020.1.sm.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 3949217 3949398 . - . ID=Zjn_sc00007.1.g09020.1.sm.mk:exon:1

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