Z. japonica Nagirizaki
Zjn_sc00007.1.g08110.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G65060.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 593 1 587 0.0 94.6 60.2 72.2
Subject 561 1 561
Annot | Symbols: 4CL3 | 4-coumarate:CoA ligase 3 | chr1:24167385-24171457 REVERSE LENGTH=561
NR ref|XP_009384734.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 593 1 593 0.0 95.8 65.4 78.1
Subject 568 1 566
Annot PREDICTED: probable 4-coumarate--CoA ligase 2 [Musa acuminata subsp. malaccensis] gi|695075019|ref|XP_009384735.1| PREDICTED: probable 4-coumarate--CoA ligase 2 [Musa acuminata subsp. malaccensis]
IRGSP Os02t0697400-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 593 1 588 0.0 96 77.4 83.5
Subject 569 1 568
Annot
Sbicolor Sobic.004G272700.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 593 1 592 0.0 95.4 81.8 86.2
Subject 566 1 566
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g08110.1.am.mk length: 593 aa.
IPR000873 AMP-dependent synthetase/ligase
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF00501 AMP-binding 1.9e-35 55-339
376-492
55-339
376-492
IPR020845 AMP-binding, conserved site
PatternScan PS00455 AMP_BINDING NA 223-234
223-234
IPR025110 AMP-binding enzyme C-terminal domain
HMMPfam PF13193 AMP-binding_C 2.2e-14 501-576
501-576
no_ID  
Gene3D G3DSA:2.30.38.10 no description 9.4e-28 407-482
407-482
Gene3D G3DSA:3.30.300.30 no description 4.2e-29 489-587
489-587
Gene3D G3DSA:3.40.50.980 no description 2.5e-07 48-228
229-283
375-396
48-228
229-283
375-396
HMMPanther PTHR24096 FAMILY 8.5e-209 29-593
29-593
HMMPanther PTHR24096:SF16 SUBFAMILY 8.5e-209 29-593
29-593
Seg seg seg NA 4-24
176-191
396-407
500-508
582-593
4-24
176-191
396-407
500-508
582-593
superfamily SSF56801 Acetyl-CoA 3.8e-143 47-589
47-589
Pseudomolecule
Chromosome Start End Strand
71667689716681628-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 3574764 3574865 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:1
Zjn_sc00007.1 maker_non_over exon 3575322 3575486 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 3575965 3576053 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:3
Zjn_sc00007.1 maker_non_over exon 3576945 3577051 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:4
Zjn_sc00007.1 maker_non_over exon 3577165 3578032 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:5
Zjn_sc00007.1 maker_non_over exon 3578075 3578135 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:6
Zjn_sc00007.1 maker_non_over exon 3578166 3578292 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:7
Zjn_sc00007.1 maker_non_over exon 3578488 3578793 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:8
Zjn_sc00007.1 maker_non_over exon 3578886 3579031 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:9
Zjn_sc00007.1 maker_non_over exon 3579120 3579187 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:10
Zjn_sc00007.1 maker_non_over exon 3579270 3579495 . + . ID=Zjn_sc00007.1.g08110.1.am.mk:exon:11

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