Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00007.1.g08070.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00007.1)

BLAST

TAIR10	AT1G32060.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	404	1	401	0.0	97.8	79.2	87.6
		Subject	395	1	393
		Annot	\| Symbols: PRK \| phosphoribulokinase \| chr1:11532668-11534406 FORWARD LENGTH=395
NR	ref\|NP_001047825.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	404	1	404	0.0	99.8	92.6	95.8
		Subject	403	1	403
		Annot	Os02g0698000 [Oryza sativa Japonica Group] gi\|23198434\|gb\|AAM94337.2\| phosphoribulokinase precursor [Oryza sativa Indica Group] gi\|23305934\|gb\|AAN17353.1\| phosphoribulokinase precursor [Oryza sativa Indica Group] gi\|41052955\|dbj\|BAD07865.1\| phosphoribulokinase precursor [Oryza sativa Japonica Group] gi\|113537356\|dbj\|BAF09739.1\| Os02g0698000 [Oryza sativa Japonica Group] gi\|125540778\|gb\|EAY87173.1\| hypothetical protein OsI_08574 [Oryza sativa Indica Group] gi\|125583350\|gb\|EAZ24281.1\| hypothetical protein OsJ_08032 [Oryza sativa Japonica Group] gi\|215740841\|dbj\|BAG96997.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|530684244\|gb\|AGT38449.1\| phosphoribulokinase [Oryza sativa Japonica Group]
IRGSP	Os02t0698000-03_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	404	1	404	0.0	99.8	92.6	95.8
		Subject	403	1	403
		Annot
Sbicolor	Sobic.004G272100.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	404	1	404	0.0	103.2	92.1	95
		Subject	417	1	417
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR006082	Phosphoribulokinase
Zjn_sc00007.1.g08070.1.sm.mkhc				length: 404 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0005975	carbohydrate metabolic process
Molecular Function	GO:0008974	phosphoribulokinase activity
FPrintScan	PR00478	PHRIBLKINASE	2.5e-35	65-82 174-192 209-226 227-250
PatternScan	PS00567	PHOSPHORIBULOKINASE	NA	209-222
IPR006083	Phosphoribulokinase/uridine kinase
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0008152	metabolic process
Molecular Function	GO:0016301	kinase activity
HMMPfam	PF00485	PRK	6.2e-81	60-258
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	4.8e-39	56-331
no_ID
Gene3D	G3DSA:3.40.50.300	no description	4.5e-98	56-331
HMMPanther	PTHR10285	URIDINE	5.3e-251	1-395
HMMPanther	PTHR10285:SF29	PHOSPHORIBULOKINASE	5.3e-251	1-395
Seg	seg	seg	NA	34-46 83-94

Pseudomolecule

Chromosome	Start	End	Strand
7	16693342	16695671	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00007.1	maker	exon	3560721	3561253	.	-	.	ID=Zjn_sc00007.1.g08070.1.sm.mkhc:exon:5
Zjn_sc00007.1	maker	exon	3561494	3561738	.	-	.	ID=Zjn_sc00007.1.g08070.1.sm.mkhc:exon:4
Zjn_sc00007.1	maker	exon	3561882	3561966	.	-	.	ID=Zjn_sc00007.1.g08070.1.sm.mkhc:exon:3
Zjn_sc00007.1	maker	exon	3562074	3562158	.	-	.	ID=Zjn_sc00007.1.g08070.1.sm.mkhc:exon:2
Zjn_sc00007.1	maker	exon	3562401	3563050	.	-	.	ID=Zjn_sc00007.1.g08070.1.sm.mkhc:exon:1