Z. japonica Nagirizaki
Zjn_sc00007.1.g07890.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G31210.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
406 |
60 |
401 |
5e-45 |
105.4 |
31 |
46.3 |
| Subject |
428 |
101 |
421 |
|
| Annot |
| Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13296655-13298139 FORWARD LENGTH=428 |
| NR |
ref|XP_004953537.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
406 |
20 |
406 |
e-177 |
117 |
75.4 |
84 |
| Subject |
475 |
88 |
475 |
|
| Annot |
PREDICTED: transcription factor TIP2-like [Setaria italica] |
| IRGSP |
Os04t0599300-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
406 |
32 |
406 |
e-138 |
114.3 |
62.3 |
74.6 |
| Subject |
464 |
92 |
464 |
|
| Annot |
|
| Sbicolor |
Sobic.004G270900.2.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
406 |
35 |
406 |
e-177 |
116.5 |
75.4 |
82 |
| Subject |
473 |
103 |
473 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00007.1.g07890.1.am.mkhc |
length: 406 aa. |
| IPR011598 |
Myc-type, basic helix-loop-helix (bHLH) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| Gene3D |
G3DSA:4.10.280.10 |
no description |
4e-09 |
210-265 |
| HMMPfam |
PF00010 |
HLH |
1e-07 |
210-252 |
| HMMSmart |
SM00353 |
helix |
1.4e-07 |
209-258 |
| ProfileScan |
PS50888 |
BHLH |
13.008 |
203-252 |
| superfamily |
SSF47459 |
HLH, |
2.7e-11 |
193-270 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
249-270 |
| HMMPanther |
PTHR11514 |
MYC |
3e-24 |
211-406 |
| HMMPanther |
PTHR11514:SF8 |
EGL3 |
3e-24 |
211-406 |
| Seg |
seg |
seg |
NA |
279-290 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 16770907 | 16774422 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00007.1 |
maker |
exon |
3481970 |
3482222 |
. |
+ |
. |
ID=Zjn_sc00007.1.g07890.1.am.mkhc:exon:1 |
| Zjn_sc00007.1 |
maker |
exon |
3483245 |
3483440 |
. |
+ |
. |
ID=Zjn_sc00007.1.g07890.1.am.mkhc:exon:2 |
| Zjn_sc00007.1 |
maker |
exon |
3483563 |
3484166 |
. |
+ |
. |
ID=Zjn_sc00007.1.g07890.1.am.mkhc:exon:3 |
| Zjn_sc00007.1 |
maker |
exon |
3484818 |
3485237 |
. |
+ |
. |
ID=Zjn_sc00007.1.g07890.1.am.mkhc:exon:4 |
| Zjn_sc00007.1 |
maker |
exon |
3485344 |
3485485 |
. |
+ |
. |
ID=Zjn_sc00007.1.g07890.1.am.mkhc:exon:5 |