Z. japonica Nagirizaki
Zjn_sc00007.1.g07800.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G13960.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 390 66 178 3e-40 101.8 19.5 23.1
Subject 397 8 124
Annot | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397
NR ref|XP_004953585.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 390 1 390 e-149 101.3 75.9 82.6
Subject 395 3 395
Annot PREDICTED: growth-regulating factor 4-like [Setaria italica]
IRGSP Os04t0600900-02_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 390 1 390 e-115 98.5 62.8 73.6
Subject 384 3 384
Annot
Sbicolor Sobic.004G269900.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 390 1 390 e-133 104.1 74.9 81.5
Subject 406 3 406
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g07800.1.sm.mk length: 390 aa.
IPR014977 WRC
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF08879 WRC 1.1e-21 135-179
135-179
IPR014978 Glutamine-Leucine-Glutamine, QLQ
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08880 QLQ 2e-15 74-109
74-109
HMMSmart SM00951 no description 4e-10 73-109
73-109
no_ID  
HMMPanther PTHR31602 FAMILY 9.5e-73 52-390
52-390
Seg seg seg NA 47-60
190-203
216-240
247-260
375-386
47-60
190-203
216-240
247-260
375-386
Pseudomolecule
Chromosome Start End Strand
71680790316810580-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 3445812 3445963 . + . ID=Zjn_sc00007.1.g07800.1.sm.mk:exon:1
Zjn_sc00007.1 maker_non_over exon 3446019 3446236 . + . ID=Zjn_sc00007.1.g07800.1.sm.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 3446576 3446990 . + . ID=Zjn_sc00007.1.g07800.1.sm.mk:exon:3
Zjn_sc00007.1 maker_non_over exon 3448102 3448489 . + . ID=Zjn_sc00007.1.g07800.1.sm.mk:exon:4

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