Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00007.1.g06380.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00007.1)

BLAST

TAIR10	AT2G22900.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	760	334	756	e-129	59.1	28.7	37.5
		Subject	449	30	448
		Annot	\| Symbols: \| Galactosyl transferase GMA12/MNN10 family protein \| chr2:9744359-9746193 REVERSE LENGTH=449
NR	ref\|NP_001105164.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	760	324	759	0.0	58.4	46.6	49.5
		Subject	444	1	444
		Annot	alpha-6-galactosyltransferase [Zea mays] gi\|55956982\|emb\|CAI11455.1\| alpha-6-galactosyltransferase [Zea mays] gi\|194696798\|gb\|ACF82483.1\| unknown [Zea mays] gi\|413923717\|gb\|AFW63649.1\| hypothetical protein ZEAMMB73_992521 [Zea mays]
IRGSP	Os02t0723200-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	760	322	755	0.0	58.8	44.2	48.2
		Subject	447	24	445
		Annot
Sbicolor	Sobic.004G256400.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	760	324	759	0.0	58.3	46.8	50.5
		Subject	443	1	443
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR008630	Galactosyl transferase
Zjn_sc00007.1.g06380.1.am.mk				length: 760 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0016021	integral to membrane
Molecular Function	GO:0016758	transferase activity, transferring hexosyl groups
HMMPfam	PF05637	Glyco_transf_34	7.9e-62	427-703 427-703
no_ID
HMMPanther	PTHR31311	FAMILY	9.6e-170	324-753 324-753
Seg	seg	seg	NA	278-291 302-319 337-355 375-387 640-681 278-291 302-319 337-355 375-387 640-681

Pseudomolecule

Chromosome	Start	End	Strand
7	17416648	17420639	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00007.1	maker_non_over	exon	2835753	2837120	.	-	.	ID=Zjn_sc00007.1.g06380.1.am.mk:exon:6
Zjn_sc00007.1	maker_non_over	exon	2837214	2837400	.	-	.	ID=Zjn_sc00007.1.g06380.1.am.mk:exon:5
Zjn_sc00007.1	maker_non_over	exon	2837757	2837867	.	-	.	ID=Zjn_sc00007.1.g06380.1.am.mk:exon:4
Zjn_sc00007.1	maker_non_over	exon	2837985	2838065	.	-	.	ID=Zjn_sc00007.1.g06380.1.am.mk:exon:3
Zjn_sc00007.1	maker_non_over	exon	2838148	2838218	.	-	.	ID=Zjn_sc00007.1.g06380.1.am.mk:exon:2
Zjn_sc00007.1	maker_non_over	exon	2839280	2839744	.	-	.	ID=Zjn_sc00007.1.g06380.1.am.mk:exon:1