Z. japonica Nagirizaki
Zjn_sc00007.1.g05870.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G14210.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 69 1 64 3e-26 339.1 75.4 88.4
Subject 234 1 64
Annot | Symbols: ANR1, AGL44 | AGAMOUS-like 44 | chr2:6018841-6023585 FORWARD LENGTH=234
NR ref|XP_012703481.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 69 1 60 4e-25 350.7 82.6 85.5
Subject 242 1 60
Annot PREDICTED: MADS-box transcription factor 57-like [Setaria italica] gi|835914464|ref|XP_012703484.1| PREDICTED: MADS-box transcription factor 57-like [Setaria italica]
IRGSP Os02t0731200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 69 1 60 4e-28 349.3 82.6 85.5
Subject 241 1 60
Annot
Sbicolor Sobic.004G250000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 69 1 60 6e-28 266.7 82.6 85.5
Subject 184 1 60
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g05870.1.am.mk length: 69 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 4e-30 3-23
23-38
38-59
3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 1.6e-27 10-59
10-59
HMMSmart SM00432 no description 8.1e-41 1-60
1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
3-57
ProfileScan PS50066 MADS_BOX_2 31.945 1-61
1-61
superfamily SSF55455 SRF-like 3.6e-27 2-61
2-61
no_ID  
HMMPanther PTHR11945 MADS 8.7e-43 1-60
1-60
HMMPanther PTHR11945:SF19 MADS 8.7e-43 1-60
1-60
Pseudomolecule
Chromosome Start End Strand
71761708617617592+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 2638800 2638827 . - . ID=Zjn_sc00007.1.g05870.1.am.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 2639125 2639306 . - . ID=Zjn_sc00007.1.g05870.1.am.mk:exon:1

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