Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00007.1.g05040.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00007.1)

BLAST

TAIR10	AT1G73590.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	537	1	518	0.0	115.8	65.7	74.3
		Subject	622	1	525
		Annot	\| Symbols: PIN1, ATPIN1 \| Auxin efflux carrier family protein \| chr1:27659772-27662876 FORWARD LENGTH=622
NR	ref\|NP_001048095.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	537	1	518	0.0	110.8	86.4	88.5
		Subject	595	1	498
		Annot	Os02g0743400 [Oryza sativa Japonica Group] gi\|75251559\|sp\|Q5SMQ9.1\|PIN1_ORYSJ RecName: Full=Auxin efflux carrier component 1; AltName: Full=Ethylene-insensitive root 1 homolog; AltName: Full=OsPIN1 gi\|3377509\|gb\|AAC39514.1\| auxin transport protein REH1 [Oryza sativa] gi\|55773893\|dbj\|BAD72497.1\| putative auxin transport protein [Oryza sativa Japonica Group] gi\|55773896\|dbj\|BAD72501.1\| putative auxin transport protein [Oryza sativa Japonica Group] gi\|113537626\|dbj\|BAF10009.1\| Os02g0743400 [Oryza sativa Japonica Group] gi\|215717147\|dbj\|BAG95510.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|218191564\|gb\|EEC73991.1\| hypothetical protein OsI_08905 [Oryza sativa Indica Group] gi\|222623663\|gb\|EEE57795.1\| hypothetical protein OsJ_08350 [Oryza sativa Japonica Group] gi\|294831558\|tpd\|FAA00676.1\| TPA: auxin efflux carrier [Oryza sativa Japonica Group]
IRGSP	Os02t0743400-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	537	1	518	0.0	110.8	86.4	88.5
		Subject	595	1	498
		Annot
Sbicolor	Sobic.004G240900.2.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	537	1	521	0.0	100.4	82.9	85.5
		Subject	539	1	511
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004776	Auxin efflux carrier
Zjn_sc00007.1.g05040.1.sm.mkhc				length: 537 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0016021	integral to membrane
Biological Process	GO:0055085	transmembrane transport
HMMPfam	PF03547	Mem_trans	1.1e-131	9-516
IPR014024	Auxin efflux carrier, plant type
HMMTigr	TIGR00946	2a69:	5.8e-96	1-468
no_ID
HMMPanther	PTHR31752	FAMILY	1.5e-230	2-516
HMMPanther	PTHR31752:SF0	SUBFAMILY	1.5e-230	2-516
Seg	seg	seg	NA	311-328 398-421

Pseudomolecule

Chromosome	Start	End	Strand
7	18044039	18045764	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00007.1	maker	exon	2210628	2211747	.	+	.	ID=Zjn_sc00007.1.g05040.1.sm.mkhc:exon:1
Zjn_sc00007.1	maker	exon	2211840	2212179	.	+	.	ID=Zjn_sc00007.1.g05040.1.sm.mkhc:exon:2
Zjn_sc00007.1	maker	exon	2212200	2212353	.	+	.	ID=Zjn_sc00007.1.g05040.1.sm.mkhc:exon:3