Z. japonica Nagirizaki
Zjn_sc00007.1.g04730.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G28857.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 87 2e-19 103.4 51.7 76.4
Subject 92 1 91
Annot | Symbols: | basic helix-loop-helix (bHLH) DNA-binding family protein | chr3:10855781-10856313 REVERSE LENGTH=92
NR ref|XP_004953911.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 89 2e-38 98.9 96.6 98.9
Subject 88 1 88
Annot PREDICTED: transcription factor ILI5 [Setaria italica]
IRGSP Os02t0747900-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 13 89 7e-34 98.9 78.7 84.3
Subject 88 13 88
Annot
Sbicolor Sobic.004G237000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 9 89 7e-38 101.1 87.6 89.9
Subject 90 11 90
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g04730.1.sm.mk length: 89 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 6.7e-08 14-71
14-71
HMMPfam PF00010 HLH 1.1e-05 15-55
15-55
ProfileScan PS50888 BHLH 9.350 1-55
1-55
superfamily SSF47459 HLH, 1.9e-06 14-88
14-88
no_ID  
Coil coil coiled-coil NA 52-73
52-73
Seg seg seg NA 30-37
60-74
30-37
60-74
Pseudomolecule
Chromosome Start End Strand
71816826318168680-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 2087712 2087825 . + . ID=Zjn_sc00007.1.g04730.1.sm.mk:exon:1
Zjn_sc00007.1 maker_non_over exon 2087974 2088129 . + . ID=Zjn_sc00007.1.g04730.1.sm.mk:exon:2

Top