Z. japonica Nagirizaki
Zjn_sc00007.1.g03250.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G77470.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 230 1 169 9e-34 160.4 38.7 47.8
Subject 369 1 182
Annot | Symbols: RFC3, RFC5 | replication factor C subunit 3 | chr1:29112194-29114323 REVERSE LENGTH=369
NR ref|XP_003570529.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 230 1 139 8e-45 155.7 45.7 50
Subject 358 1 157
Annot PREDICTED: replication factor C subunit 3 [Brachypodium distachyon]
IRGSP Os02t0775200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 230 1 139 7e-45 157 50 52.6
Subject 361 1 160
Annot
Sbicolor Sobic.004G315500.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 230 1 139 1e-45 157.4 46.5 49.6
Subject 362 1 161
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g03250.1.sm.mkhc length: 230 aa.
IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006260 DNA replication    
superfamily SSF48019 DNA 2e-09 164-224
IPR013748 Replication factor C, C-terminal domain
HMMPfam PF08542 Rep_fac_C 1.6e-07 169-218
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1e-09 34-166
no_ID  
Gene3D G3DSA:1.20.272.10 no description 2.7e-16 175-226
Gene3D G3DSA:3.40.50.300 no description 1.8e-14 37-61
80-143
HMMPanther PTHR11669 REPLICATION 3e-23 21-139
Seg seg seg NA 4-32
Pseudomolecule
Chromosome Start End Strand
71882294618825749-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker exon 1430643 1430871 . + . ID=Zjn_sc00007.1.g03250.1.sm.mkhc:exon:1
Zjn_sc00007.1 maker exon 1431194 1431249 . + . ID=Zjn_sc00007.1.g03250.1.sm.mkhc:exon:2
Zjn_sc00007.1 maker exon 1431300 1431403 . + . ID=Zjn_sc00007.1.g03250.1.sm.mkhc:exon:3
Zjn_sc00007.1 maker exon 1431494 1431584 . + . ID=Zjn_sc00007.1.g03250.1.sm.mkhc:exon:4
Zjn_sc00007.1 maker exon 1432332 1432426 . + . ID=Zjn_sc00007.1.g03250.1.sm.mkhc:exon:5
Zjn_sc00007.1 maker exon 1432690 1432758 . + . ID=Zjn_sc00007.1.g03250.1.sm.mkhc:exon:6
Zjn_sc00007.1 maker exon 1433333 1433446 . + . ID=Zjn_sc00007.1.g03250.1.sm.mkhc:exon:7

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