Z. japonica Nagirizaki
Zjn_sc00007.1.g03130.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G06510.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 655 6 650 0.0 97.7 57.4 74.5
Subject 640 5 640
Annot | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replication protein A 1A | chr2:2585215-2587601 FORWARD LENGTH=640
NR ref|XP_004954095.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 655 1 655 0.0 99.7 81.1 90.4
Subject 653 1 653
Annot PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Setaria italica]
IRGSP Os02t0776800-02_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 655 1 650 0.0 100.2 73.4 85
Subject 656 1 651
Annot
Sbicolor Sobic.004G316800.2.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 655 1 651 0.0 99.5 78 87.9
Subject 652 1 650
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g03130.1.sm.mkhc length: 655 aa.
IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01336 tRNA_anti-codon 1.2e-09 225-304
IPR004591 Replication factor-a protein 1 Rpa1
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMTigr TIGR00617 rpa1: 1.3e-185 21-649
IPR007199 Replication factor-A protein 1, N-terminal
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006260 DNA replication    
HMMPfam PF04057 Rep-A_N 2.9e-26 6-104
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 1.7e-47 4-114
210-314
327-456
504-651
superfamily SSF50249 Nucleic 6.3e-28 473-654
327-461
207-324
2-112
IPR013955 Replication factor A, C-terminal
HMMPfam PF08646 Rep_fac-A_C 1.9e-50 495-644
no_ID  
HMMPanther PTHR23273 REPLICATION 2.4e-220 1-651
Seg seg seg NA 53-62
Pseudomolecule
Chromosome Start End Strand
71888933118892607-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker exon 1363785 1364062 . + . ID=Zjn_sc00007.1.g03130.1.sm.mkhc:exon:1
Zjn_sc00007.1 maker exon 1365057 1367061 . + . ID=Zjn_sc00007.1.g03130.1.sm.mkhc:exon:2

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