Z. japonica Nagirizaki
Zjn_sc00007.1.g03110.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G13960.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 245 546 2e-44 64.9 20.1 27.6
Subject 397 1 332
Annot | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397
NR ref|XP_012701613.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 243 608 e-150 62.1 48.5 51.8
Subject 380 1 378
Annot PREDICTED: growth-regulating factor 1-like isoform X2 [Setaria italica]
IRGSP Os02t0776900-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 243 608 e-131 64.9 44 48.7
Subject 397 1 395
Annot
Sbicolor Sobic.004G317000.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 612 243 608 e-141 64.7 46.6 51.5
Subject 396 1 391
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g03110.1.am.mk length: 612 aa.
IPR014977 WRC
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF08879 WRC 2.4e-20 331-374
331-374
IPR014978 Glutamine-Leucine-Glutamine, QLQ
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08880 QLQ 5.5e-17 260-295
260-295
HMMSmart SM00951 no description 2.6e-11 259-295
259-295
no_ID  
HMMPanther PTHR31602 FAMILY 2.8e-82 242-612
242-612
Seg seg seg NA 2-17
119-131
250-257
378-397
2-17
119-131
250-257
378-397
Pseudomolecule
Chromosome Start End Strand
71889702818899603-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 1356789 1357009 . + . ID=Zjn_sc00007.1.g03110.1.am.mk:exon:1
Zjn_sc00007.1 maker_non_over exon 1357316 1357502 . + . ID=Zjn_sc00007.1.g03110.1.am.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 1357822 1358356 . + . ID=Zjn_sc00007.1.g03110.1.am.mk:exon:3
Zjn_sc00007.1 maker_non_over exon 1358469 1359364 . + . ID=Zjn_sc00007.1.g03110.1.am.mk:exon:4

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