Z. japonica Nagirizaki
Zjn_sc00007.1.g01680.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G23030.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 294 2 146 1e-19 59.2 20.7 26.2
Subject 174 15 150
Annot | Symbols: IAA2 | indole-3-acetic acid inducible 2 | chr3:8181069-8181685 REVERSE LENGTH=174
NR ref|XP_004954274.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 294 1 154 7e-44 59.5 36.7 41.8
Subject 175 1 170
Annot PREDICTED: auxin-responsive protein IAA9-like [Setaria italica]
IRGSP Os02t0805100-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 294 1 154 3e-41 61.9 34.4 40.8
Subject 182 1 177
Annot
Sbicolor Sobic.004G336500.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 294 1 154 5e-36 67 34.7 39.8
Subject 197 1 192
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g01680.1.am.mk length: 294 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 1.9e-30 45-146
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 24.572 74-161
no_ID  
HMMPanther PTHR31734 FAMILY 5.3e-20 51-147
Seg seg seg NA 20-31
47-54
169-185
262-278
superfamily SSF54277 CAD 2.4e-15 61-146
Pseudomolecule
Chromosome Start End Strand
71955368219555603+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker_non_over exon 700789 701019 . - . ID=Zjn_sc00007.1.g01680.1.am.mk:exon:4
Zjn_sc00007.1 maker_non_over exon 701317 701533 . - . ID=Zjn_sc00007.1.g01680.1.am.mk:exon:3
Zjn_sc00007.1 maker_non_over exon 702185 702275 . - . ID=Zjn_sc00007.1.g01680.1.am.mk:exon:2
Zjn_sc00007.1 maker_non_over exon 702365 702710 . - . ID=Zjn_sc00007.1.g01680.1.am.mk:exon:1

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