Z. japonica Nagirizaki
Zjn_sc00007.1.g00030.1.es.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G35020.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 197 1 197 e-100 100.5 90.4 98
Subject 198 1 198
Annot | Symbols: RAC3 | RAC-like 3 | chr4:16673176-16674540 FORWARD LENGTH=198
NR gb|ACF83636.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 197 1 197 e-100 100 95.9 99
Subject 197 1 197
Annot unknown [Zea mays] gi|195642986|gb|ACG40961.1| rac-like GTP-binding protein 5 [Zea mays] gi|413939622|gb|AFW74173.1| rop4 small GTP binding protein [Zea mays]
IRGSP Os02t0834000-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 197 1 197 e-103 100 97 99
Subject 197 1 197
Annot
Sbicolor Sobic.004G017900.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 197 1 197 2e-97 100 89.3 94.4
Subject 197 1 197
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00007.1.g00030.1.es.mkhc length: 197 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 2.1e-36 7-28
30-46
47-69
109-122
155-177
HMMPfam PF00071 Ras 9.7e-51 8-178
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 4.3e-114 9-180
ProfileScan PS51420 RHO 24.916 1-177
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 1.3e-25 7-180
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 5.7e-35 7-171
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 2.1e-20 4-180
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.5e-54 2-189
no_ID  
Gene3D G3DSA:3.40.50.300 no description 3.6e-61 3-192
HMMPanther PTHR24072 FAMILY 1.7e-164 1-190
HMMPanther PTHR24072:SF67 SUBFAMILY 1.7e-164 1-190
Seg seg seg NA 179-192
Pseudomolecule
Chromosome Start End Strand
72024566020248884+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00007.1 maker exon 7508 7970 . - . ID=Zjn_sc00007.1.g00030.1.es.mkhc:exon:7
Zjn_sc00007.1 maker exon 8069 8134 . - . ID=Zjn_sc00007.1.g00030.1.es.mkhc:exon:6
Zjn_sc00007.1 maker exon 8209 8273 . - . ID=Zjn_sc00007.1.g00030.1.es.mkhc:exon:5
Zjn_sc00007.1 maker exon 9694 9757 . - . ID=Zjn_sc00007.1.g00030.1.es.mkhc:exon:4
Zjn_sc00007.1 maker exon 9870 9979 . - . ID=Zjn_sc00007.1.g00030.1.es.mkhc:exon:3
Zjn_sc00007.1 maker exon 10074 10161 . - . ID=Zjn_sc00007.1.g00030.1.es.mkhc:exon:2
Zjn_sc00007.1 maker exon 10440 10732 . - . ID=Zjn_sc00007.1.g00030.1.es.mkhc:exon:1

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