Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00006.1.g06940.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00006.1)

BLAST

TAIR10	AT2G01290.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	314	65	312	4e-67	84.4	45.5	57.3
		Subject	265	22	264
		Annot	\| Symbols: RPI2 \| ribose-5-phosphate isomerase 2 \| chr2:149192-149989 REVERSE LENGTH=265
NR	gb\|ACN34846.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	314	61	312	e-117	184.7	69.7	73.2
		Subject	580	1	257
		Annot	unknown [Zea mays] gi\|414868543\|tpg\|DAA47100.1\| TPA: ribose-5-phosphate isomerase [Zea mays]
IRGSP	Os04t0306400-01_chr04_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	314	71	312	e-111	87.6	64.3	70.7
		Subject	275	29	273
		Annot
Sbicolor	Sobic.005G033000.1.p\|Chr05\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	314	61	312	e-114	82.8	68.8	72.3
		Subject	260	1	258
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004788	Ribose 5-phosphate isomerase, type A
Zjn_sc00006.1.g06940.1.am.mk				length: 314 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004751	ribose-5-phosphate isomerase activity
Biological Process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
HMMPanther	PTHR11934	RIBOSE-5-PHOSPHATE	4.9e-108	38-312
HMMPfam	PF06026	Rib_5-P_isom_A	3.4e-53	125-306
HMMTigr	TIGR00021	rpiA:	7.2e-68	79-306
IPR020672	Ribose-5-phosphate isomerase, type A, subgroup
Molecular Function	GO:0004751	ribose-5-phosphate isomerase activity
Biological Process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
HAMAP	MF_00170	Rib_5P_isom_A	29.188	76-309
no_ID
Gene3D	G3DSA:3.30.70.260	no description	2.2e-21	214-289
Gene3D	G3DSA:3.40.50.1360	no description	1.5e-48	78-213
HMMPanther	PTHR11934:SF0	SUBFAMILY	4.9e-108	38-312
Seg	seg	seg	NA	49-71 96-109
superfamily	SSF100950	NagB/RpiA/CoA	9e-40	75-225
superfamily	SSF75445	D-ribose-5-phosphate	6.6e-14	204-290

Pseudomolecule

Chromosome	Start	End	Strand
12	5954960	5955904	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00006.1	maker_non_over	exon	3946743	3947687	.	-	.	ID=Zjn_sc00006.1.g06940.1.am.mk:exon:1