Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00006.1.g06410.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00006.1)

BLAST

TAIR10	AT1G51340.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	514	62	484	2e-64	100.2	38.7	50.4
		Subject	515	13	493
		Annot	\| Symbols: \| MATE efflux family protein \| chr1:19032021-19034681 FORWARD LENGTH=515
NR	ref\|NP_001049386.2\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	514	56	484	1e-96	111.1	45.9	57.6
		Subject	571	65	549
		Annot	Os03g0216700 [Oryza sativa Japonica Group] gi\|108706854\|gb\|ABF94649.1\| MATE efflux family protein, putative, expressed [Oryza sativa Japonica Group] gi\|108706856\|gb\|ABF94651.1\| MATE efflux family protein, putative, expressed [Oryza sativa Japonica Group] gi\|215715370\|dbj\|BAG95121.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|255674312\|dbj\|BAF11300.2\| Os03g0216700 [Oryza sativa Japonica Group]
IRGSP	Os01t0919100-00_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	514	51	484	e-102	118.3	47.5	58
		Subject	608	78	586
		Annot
Sbicolor	Sobic.001G454900.1.p\|Chr01\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	514	41	484	2e-99	109.9	46.7	57.4
		Subject	565	44	543
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

no_ID
Zjn_sc00006.1.g06410.1.am.mk				length: 514 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR11206	MULTIDRUG	3.2e-70	62-437
HMMPanther	PTHR11206:SF47	MATE	3.2e-70	62-437
Seg	seg	seg	NA	12-31 280-297

Pseudomolecule

Chromosome	Start	End	Strand
12	6521330	6529280	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00006.1	maker_non_over	exon	3373367	3373459	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:9
Zjn_sc00006.1	maker_non_over	exon	3373570	3373723	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:8
Zjn_sc00006.1	maker_non_over	exon	3374089	3374213	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:7
Zjn_sc00006.1	maker_non_over	exon	3374395	3374528	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:6
Zjn_sc00006.1	maker_non_over	exon	3377301	3377390	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:5
Zjn_sc00006.1	maker_non_over	exon	3379763	3379863	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:4
Zjn_sc00006.1	maker_non_over	exon	3380196	3380276	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:3
Zjn_sc00006.1	maker_non_over	exon	3380445	3380569	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:2
Zjn_sc00006.1	maker_non_over	exon	3380676	3381317	.	-	.	ID=Zjn_sc00006.1.g06410.1.am.mk:exon:1