Z. japonica Nagirizaki
Zjn_sc00006.1.g05210.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G65750.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1016 1 1013 0.0 100.9 83.6 92.2
Subject 1025 1 1021
Annot | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr5:26304212-26307947 FORWARD LENGTH=1025
NR ref|NP_001169698.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1016 1 1016 0.0 100.9 95.9 98.2
Subject 1025 1 1025
Annot hypothetical protein [Zea mays] gi|670374162|ref|XP_008668443.1| PREDICTED: hypothetical protein isoform X1 [Zea mays] gi|670374164|ref|XP_008668444.1| PREDICTED: hypothetical protein isoform X1 [Zea mays] gi|224031001|gb|ACN34576.1| unknown [Zea mays] gi|414587574|tpg|DAA38145.1| TPA: hypothetical protein ZEAMMB73_516904 [Zea mays] gi|414587575|tpg|DAA38146.1| TPA: hypothetical protein ZEAMMB73_516904 [Zea mays]
IRGSP Os04t0390000-02_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1016 1 1016 0.0 100 93.9 97.4
Subject 1016 1 1016
Annot
Sbicolor Sobic.006G052800.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1016 1 1016 0.0 100.9 95.7 98.2
Subject 1025 1 1025
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00006.1.g05210.1.sm.mkhc length: 1016 aa.
IPR001017 Dehydrogenase, E1 component
method AccNumber shortName E-value location
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor    
HMMPfam PF00676 E1_dh 4.4e-60 238-560
IPR005475 Transketolase-like, pyrimidine-binding domain
HMMPfam PF02779 Transket_pyr 4.8e-66 630-845
HMMSmart SM00861 Transketolase, 6.9e-54 631-844
IPR011603 2-oxoglutarate dehydrogenase, E1 component
Molecular Function GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity    
Biological Process GO:0006099 tricarboxylic acid cycle    
Molecular Function GO:0030976 thiamine pyrophosphate binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMPIR PIRSF000157 2-oxoglutarate 0 37-1010
HMMPanther PTHR23152 2-OXOGLUTARATE 0 14-1011
HMMTigr TIGR00239 2oxo_dh_E1: 0 107-1006
no_ID  
Gene3D G3DSA:3.40.50.970 no description 1.3e-17 191-581
694-846
HMMPanther PTHR23152:SF0 SUBFAMILY 0 14-1011
superfamily SSF52518 Thiamin 1.9e-47 183-576
612-852
Pseudomolecule
Chromosome Start End Strand
1273564207362790+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00006.1 maker exon 2539857 2540866 . - . ID=Zjn_sc00006.1.g05210.1.sm.mkhc:exon:8
Zjn_sc00006.1 maker exon 2541265 2541388 . - . ID=Zjn_sc00006.1.g05210.1.sm.mkhc:exon:7
Zjn_sc00006.1 maker exon 2541485 2541700 . - . ID=Zjn_sc00006.1.g05210.1.sm.mkhc:exon:6
Zjn_sc00006.1 maker exon 2541778 2541906 . - . ID=Zjn_sc00006.1.g05210.1.sm.mkhc:exon:5
Zjn_sc00006.1 maker exon 2542442 2542688 . - . ID=Zjn_sc00006.1.g05210.1.sm.mkhc:exon:4
Zjn_sc00006.1 maker exon 2543636 2543968 . - . ID=Zjn_sc00006.1.g05210.1.sm.mkhc:exon:3
Zjn_sc00006.1 maker exon 2544103 2544329 . - . ID=Zjn_sc00006.1.g05210.1.sm.mkhc:exon:2
Zjn_sc00006.1 maker exon 2544692 2546227 . - . ID=Zjn_sc00006.1.g05210.1.sm.mkhc:exon:1

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