Z. japonica Nagirizaki
Zjn_sc00006.1.g05020.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G55070.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 421 23 421 e-149 110.2 66 74.8
Subject 464 62 464
Annot | Symbols: | Dihydrolipoamide succinyltransferase | chr5:22347637-22350409 FORWARD LENGTH=464
NR ref|XP_004975431.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 421 1 421 0.0 105.9 94.1 96.2
Subject 446 1 446
Annot PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [Setaria italica]
IRGSP Os04t0394200-03_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 421 1 421 0.0 104.5 88.6 93.8
Subject 440 1 440
Annot
Sbicolor Sobic.001G465400.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 421 18 421 0.0 121.4 86.7 89.1
Subject 511 87 511
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00006.1.g05020.1.sm.mkhc length: 421 aa.
IPR000089 Biotin/lipoyl attachment
method AccNumber shortName E-value location
HMMPfam PF00364 Biotin_lipoyl 3.8e-14 72-123
ProfileScan PS50968 BIOTINYL_LIPOYL 12.777 50-123
IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016746 transferase activity, transferring acyl groups    
HMMPfam PF00198 2-oxoacid_dh 1.3e-80 190-419
IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site
PatternScan PS00189 LIPOYL NA 74-103
IPR006255 Dihydrolipoamide succinyltransferase
Molecular Function GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity    
Biological Process GO:0006099 tricarboxylic acid cycle    
Cellular Component GO:0045252 oxoglutarate dehydrogenase complex    
HMMTigr TIGR01347 sucB: 8.1e-131 166-420
IPR011053 Single hybrid motif
superfamily SSF51230 Single 5.5e-17 45-145
IPR023213 Chloramphenicol acetyltransferase-like domain
Gene3D G3DSA:3.30.559.10 no description 2e-92 181-419
no_ID  
Gene3D G3DSA:2.40.50.100 no description 2.5e-18 72-142
HMMPanther PTHR23151 DIHYDROLIPOAMIDE 1.7e-170 74-421
HMMPanther PTHR23151:SF8 DIHYDROLIPOAMIDE 1.7e-170 74-421
Seg seg seg NA 2-23
141-184
272-284
superfamily SSF52777 CoA-dependent 1.6e-92 178-419
Pseudomolecule
Chromosome Start End Strand
1274489037454335+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00006.1 maker exon 2448312 2449538 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:12
Zjn_sc00006.1 maker exon 2449631 2449825 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:11
Zjn_sc00006.1 maker exon 2449908 2450018 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:10
Zjn_sc00006.1 maker exon 2450100 2450190 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:9
Zjn_sc00006.1 maker exon 2450981 2451075 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:8
Zjn_sc00006.1 maker exon 2451163 2451429 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:7
Zjn_sc00006.1 maker exon 2451525 2451569 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:6
Zjn_sc00006.1 maker exon 2451662 2451717 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:5
Zjn_sc00006.1 maker exon 2451963 2452030 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:4
Zjn_sc00006.1 maker exon 2452159 2452198 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:3
Zjn_sc00006.1 maker exon 2452292 2452349 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:2
Zjn_sc00006.1 maker exon 2453653 2453744 . - . ID=Zjn_sc00006.1.g05020.1.sm.mkhc:exon:1

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