Z. japonica Nagirizaki
Zjn_sc00006.1.g04070.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G44680.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 425 1 419 0.0 100.2 80 91.5
Subject 426 1 424
Annot | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426
NR ref|XP_006652253.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 425 1 425 0.0 101.2 94.4 97.4
Subject 430 1 430
Annot PREDICTED: histone deacetylase 9-like [Oryza brachyantha]
IRGSP Os06t0583400-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 425 4 409 e-146 121.9 59.1 72.9
Subject 518 21 426
Annot
Sbicolor Sobic.006G067600.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 425 1 413 0.0 101.2 93.4 95.5
Subject 430 1 418
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00006.1.g04070.1.sm.mkhc length: 425 aa.
IPR000286 Histone deacetylase superfamily
method AccNumber shortName E-value location
FPrintScan PR01270 HDASUPER 1.9e-22 128-151
160-175
246-256
HMMPanther PTHR10625 HISTONE 2.3e-254 1-421
IPR003084 Histone deacetylase
Molecular Function GO:0004407 histone deacetylase activity    
Biological Process GO:0016575 histone deacetylation    
FPrintScan PR01271 HISDACETLASE 3.2e-47 26-43
85-102
106-126
147-163
207-220
224-242
HMMPIR PIRSF037913 Histone 0 3-425
IPR023801 Histone deacetylase domain
Gene3D G3DSA:3.40.800.20 no description 2.7e-128 3-376
HMMPfam PF00850 Hist_deacetyl 2.2e-77 20-311
no_ID  
HMMPanther PTHR10625:SF28 HISTONE 2.3e-254 1-421
Seg seg seg NA 382-394
superfamily SSF52768 Arginase/deacetylase 3.2e-126 5-366
Pseudomolecule
Chromosome Start End Strand
1279491937955341+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00006.1 maker exon 1947306 1947802 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:14
Zjn_sc00006.1 maker exon 1948289 1948355 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:13
Zjn_sc00006.1 maker exon 1948520 1948618 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:12
Zjn_sc00006.1 maker exon 1948857 1948927 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:11
Zjn_sc00006.1 maker exon 1949132 1949222 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:10
Zjn_sc00006.1 maker exon 1949300 1949349 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:9
Zjn_sc00006.1 maker exon 1949600 1949708 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:8
Zjn_sc00006.1 maker exon 1949788 1949880 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:7
Zjn_sc00006.1 maker exon 1951164 1951227 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:6
Zjn_sc00006.1 maker exon 1951335 1951554 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:5
Zjn_sc00006.1 maker exon 1951629 1951703 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:4
Zjn_sc00006.1 maker exon 1952154 1952256 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:3
Zjn_sc00006.1 maker exon 1952351 1952463 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:2
Zjn_sc00006.1 maker exon 1953293 1953454 . - . ID=Zjn_sc00006.1.g04070.1.sm.mkhc:exon:1

Top