Z. japonica Nagirizaki
Zjn_sc00006.1.g02650.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G71450.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 17 90 2e-26 77.2 22.4 24.9
Subject 183 17 90
Annot | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:26927088-26927639 FORWARD LENGTH=183
NR ref|XP_004975709.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 24 170 1e-49 86.1 47.3 49.8
Subject 204 31 193
Annot PREDICTED: ethylene-responsive transcription factor ERF027-like [Setaria italica]
IRGSP Os02t0558700-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 24 156 1e-41 77.6 40.1 43.9
Subject 184 25 159
Annot
Sbicolor Sobic.004G179900.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 237 24 156 3e-33 84.4 38.4 41.8
Subject 200 27 174
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00006.1.g02650.1.am.mk length: 237 aa.
IPR001471 AP2/ERF domain
method AccNumber shortName E-value location
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 7.2e-10 24-35
46-62
Gene3D G3DSA:3.30.730.10 no description 5.2e-30 23-80
HMMPfam PF00847 AP2 1.6e-15 23-72
HMMSmart SM00380 DNA-binding 1.9e-35 23-86
ProfileScan PS51032 AP2_ERF 23.525 23-80
IPR016177 DNA-binding domain
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.5e-23 22-83
no_ID  
HMMPanther PTHR31985 FAMILY 1.7e-36 24-96
Seg seg seg NA 56-67
Pseudomolecule
Chromosome Start End Strand
1287062858708741-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00006.1 maker_non_over exon 1193906 1194193 . + . ID=Zjn_sc00006.1.g02650.1.am.mk:exon:1
Zjn_sc00006.1 maker_non_over exon 1194798 1195018 . + . ID=Zjn_sc00006.1.g02650.1.am.mk:exon:2
Zjn_sc00006.1 maker_non_over exon 1196158 1196362 . + . ID=Zjn_sc00006.1.g02650.1.am.mk:exon:3

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