Z. japonica Nagirizaki
Zjn_sc00006.1.g02240.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G17420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 597 62 593 0.0 153.9 53.3 66.8
Subject 919 78 579
Annot | Symbols: LOX3 | lipoxygenase 3 | chr1:5977512-5981384 FORWARD LENGTH=919
NR ref|NP_001105979.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 597 1 593 0.0 157.6 83.6 89.1
Subject 941 1 602
Annot tassel seed1 [Zea mays] gi|84626293|gb|ABC59691.1| lipoxygenase [Zea mays] gi|414587024|tpg|DAA37595.1| TPA: tassel seed1 [Zea mays]
IRGSP Os04t0447100-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 597 114 593 0.0 133.3 66.3 71.2
Subject 796 11 457
Annot
Sbicolor Sobic.006G095600.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 597 1 593 0.0 154.8 81.6 86.8
Subject 924 1 585
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00006.1.g02240.1.sm.mk length: 597 aa.
IPR000907 Lipoxygenase
method AccNumber shortName E-value location
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMPanther PTHR11771 LIPOXYGENASE 2.5e-185 80-593
IPR001024 PLAT/LH2 domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.60.60.20 no description 5.2e-53 70-217
HMMPfam PF01477 PLAT 3e-10 132-202
HMMSmart SM00308 Lipoxygenase 2.4e-31 68-205
ProfileScan PS50095 PLAT 17.518 82-204
IPR001246 Lipoxygenase, plant
Molecular Function GO:0005506 iron ion binding    
Molecular Function GO:0016165 lipoxygenase activity    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00468 PLTLPOXGNASE 8.4e-32 174-192
200-221
239-255
523-547
IPR008976 Lipase/lipooxygenase, PLAT/LH2
superfamily SSF49723 Lipase/lipooxygenase 8.6e-48 66-208
IPR013819 Lipoxygenase, C-terminal
Molecular Function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF00305 Lipoxygenase 7.3e-99 217-594
ProfileScan PS51393 LIPOXYGENASE_3 126.169 207-597
superfamily SSF48484 Lipoxigenase 5.7e-100 209-594
IPR027433 Lipoxygenase, domain 3
Gene3D G3DSA:4.10.372.10 no description 8.8e-25 351-448
no_ID  
Gene3D G3DSA:3.10.450.60 no description 1.1e-53 450-583
Gene3D G3DSA:4.10.375.10 no description 2.7e-36 218-332
HMMPanther PTHR11771:SF2 LIPOXYGENASE 2.5e-185 80-593
Seg seg seg NA 15-31
55-78
Pseudomolecule
Chromosome Start End Strand
1289085758911380+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00006.1 maker_non_over exon 991267 991695 . - . ID=Zjn_sc00006.1.g02240.1.sm.mk:exon:6
Zjn_sc00006.1 maker_non_over exon 991825 991910 . - . ID=Zjn_sc00006.1.g02240.1.sm.mk:exon:5
Zjn_sc00006.1 maker_non_over exon 991996 992349 . - . ID=Zjn_sc00006.1.g02240.1.sm.mk:exon:4
Zjn_sc00006.1 maker_non_over exon 992489 993076 . - . ID=Zjn_sc00006.1.g02240.1.sm.mk:exon:3
Zjn_sc00006.1 maker_non_over exon 993478 993622 . - . ID=Zjn_sc00006.1.g02240.1.sm.mk:exon:2
Zjn_sc00006.1 maker_non_over exon 993881 994072 . - . ID=Zjn_sc00006.1.g02240.1.sm.mk:exon:1

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