Z. japonica Nagirizaki
Zjn_sc00006.1.g02170.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT2G02010.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
495 |
1 |
439 |
0.0 |
99.6 |
67.5 |
77.4 |
| Subject |
493 |
1 |
445 |
|
| Annot |
| Symbols: GAD4 | glutamate decarboxylase 4 | chr2:474375-476495 REVERSE LENGTH=493 |
| NR |
ref|XP_004975763.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
495 |
1 |
495 |
0.0 |
101.6 |
91.5 |
96.8 |
| Subject |
503 |
1 |
503 |
|
| Annot |
PREDICTED: glutamate decarboxylase 2-like [Setaria italica] |
| IRGSP |
Os04t0447800-01_chr04_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
495 |
1 |
495 |
0.0 |
101 |
84 |
92.5 |
| Subject |
500 |
1 |
500 |
|
| Annot |
|
| Sbicolor |
Sobic.006G096500.1.p|Chr06|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
495 |
1 |
495 |
0.0 |
102.6 |
89.5 |
95.4 |
| Subject |
508 |
1 |
508 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00006.1.g02170.1.am.mkhc |
length: 495 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
1.8e-88 |
41-375 |
| IPR010107 |
Glutamate decarboxylase |
| Molecular Function |
GO:0004351 |
glutamate decarboxylase activity |
|
|
| Biological Process |
GO:0006536 |
glutamate metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPanther |
PTHR11999:SF1 |
GLUTAMATE |
1e-268 |
19-441 |
| HMMTigr |
TIGR01788 |
Glu-decarb-GAD: |
5.6e-193 |
19-438 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
1.2e-24 |
77-305 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
7.8e-120 |
5-442 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
1e-268 |
19-441 |
| Seg |
seg |
seg |
NA |
12-22 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 12 | 8935000 | 8936676 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00006.1 |
maker |
exon |
965971 |
966462 |
. |
- |
. |
ID=Zjn_sc00006.1.g02170.1.am.mkhc:exon:4 |
| Zjn_sc00006.1 |
maker |
exon |
966538 |
967167 |
. |
- |
. |
ID=Zjn_sc00006.1.g02170.1.am.mkhc:exon:3 |
| Zjn_sc00006.1 |
maker |
exon |
967192 |
967465 |
. |
- |
. |
ID=Zjn_sc00006.1.g02170.1.am.mkhc:exon:2 |
| Zjn_sc00006.1 |
maker |
exon |
967556 |
967647 |
. |
- |
. |
ID=Zjn_sc00006.1.g02170.1.am.mkhc:exon:1 |