Z. japonica Nagirizaki
Zjn_sc00006.1.g01090.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G48220.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 106 218 4e-42 117 24.4 29.6
Subject 379 67 182
Annot | Symbols: | Aldolase-type TIM barrel family protein | chr5:19549930-19552046 FORWARD LENGTH=379
NR gb|AFW58537.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 1 323 e-124 111.7 79 83
Subject 362 1 361
Annot hypothetical protein ZEAMMB73_905373 [Zea mays]
IRGSP Os04t0467700-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 217 324 8e-52 75.9 30.2 31.5
Subject 246 139 246
Annot
Sbicolor Sobic.006G112600.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 324 1 218 5e-85 130.2 52.5 55.6
Subject 422 1 221
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00006.1.g01090.1.sm.mkhc length: 324 aa.
IPR001468 Indole-3-glycerol phosphate synthase, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0004425 indole-3-glycerol-phosphate synthase activity    
Biological Process GO:0006568 tryptophan metabolic process    
PatternScan PS00614 IGPS NA 196-214
IPR011060 Ribulose-phosphate binding barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF51366 Ribulose-phoshate 2.3e-33 150-319
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 1.6e-26 145-217
218-315
IPR013798 Indole-3-glycerol phosphate synthase
Molecular Function GO:0004425 indole-3-glycerol-phosphate synthase activity    
HMMPfam PF00218 IGPS 1.1e-22 148-217
217-311
no_ID  
HMMPanther PTHR22854 TRYPTOPHAN 5.9e-55 106-310
HMMPanther PTHR22854:SF2 INDOLE-3-GLYCEROL 5.9e-55 106-310
Seg seg seg NA 46-57
Pseudomolecule
Chromosome Start End Strand
1294097359413271-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00006.1 maker exon 489376 489570 . + . ID=Zjn_sc00006.1.g01090.1.sm.mkhc:exon:1
Zjn_sc00006.1 maker exon 489675 489950 . + . ID=Zjn_sc00006.1.g01090.1.sm.mkhc:exon:2
Zjn_sc00006.1 maker exon 490039 490215 . + . ID=Zjn_sc00006.1.g01090.1.sm.mkhc:exon:3
Zjn_sc00006.1 maker exon 491567 491645 . + . ID=Zjn_sc00006.1.g01090.1.sm.mkhc:exon:4
Zjn_sc00006.1 maker exon 491944 492026 . + . ID=Zjn_sc00006.1.g01090.1.sm.mkhc:exon:5
Zjn_sc00006.1 maker exon 492313 492381 . + . ID=Zjn_sc00006.1.g01090.1.sm.mkhc:exon:6
Zjn_sc00006.1 maker exon 492625 492912 . + . ID=Zjn_sc00006.1.g01090.1.sm.mkhc:exon:7

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