Z. japonica Nagirizaki
Zjn_sc00005.1.g08990.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G16830.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1306 1 1126 0.0 86.6 62.2 71.5
Subject 1131 1 1128
Annot | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731709-5737531 FORWARD LENGTH=1131
NR ref|XP_004967836.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1306 1 1126 0.0 86.5 80 82.5
Subject 1130 1 1127
Annot PREDICTED: topless-related protein 2 isoform X1 [Setaria italica]
IRGSP Os01t0254100-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1306 1 1126 0.0 86.4 76.9 81.2
Subject 1129 1 1126
Annot
Sbicolor Sobic.003G115900.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1306 1 1128 0.0 86.1 78.9 81.7
Subject 1125 1 1124
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00005.1.g08990.1.am.mkhc length: 1306 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.9e-06 440-475
479-517
906-942
HMMSmart SM00320 WD40 1.4e+02 328-367
389-428
434-475
477-518
521-564
567-610
817-858
861-901
904-943
999-1035
1058-1090
ProfileScan PS50082 WD_REPEATS_2 12.547 441-476
588-619
911-952
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 3.1e-05 4-36
ProfileScan PS50896 LISH 10.297 4-36
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 4.5e-15 34-92
ProfileScan PS50897 CTLH 13.929 34-92
IPR006689 Small GTPase superfamily, ARF/SAR type
Molecular Function GO:0005525 GTP binding    
HMMPfam PF00025 Arf 3.2e-10 1241-1289
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 7.6e-37 328-649
763-1090
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 14.476 441-619
827-952
superfamily SSF50978 WD40 2.2e-38 335-654
831-1090
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 462-476
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.1e-07 1251-1278
IPR027728 Topless family
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPanther PTHR22847:SF106SUBFAMILY NOT 0 95-1158
no_ID  
Gene3D G3DSA:3.40.50.300 no description 6.9e-06 1248-1277
HMMPanther PTHR22847 WD40 0 95-1158
Seg seg seg NA 254-269
775-787
1113-1124
1189-1211
Pseudomolecule
Chromosome Start End Strand
615622431571936+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00005.1 maker exon 5552100 5552549 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:27
Zjn_sc00005.1 maker exon 5552672 5552764 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:26
Zjn_sc00005.1 maker exon 5553726 5553930 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:25
Zjn_sc00005.1 maker exon 5554195 5554370 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:24
Zjn_sc00005.1 maker exon 5554453 5554635 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:23
Zjn_sc00005.1 maker exon 5554758 5554853 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:22
Zjn_sc00005.1 maker exon 5554940 5555068 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:21
Zjn_sc00005.1 maker exon 5555142 5555318 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:20
Zjn_sc00005.1 maker exon 5555395 5555505 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:19
Zjn_sc00005.1 maker exon 5555574 5555729 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:18
Zjn_sc00005.1 maker exon 5555826 5555921 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:17
Zjn_sc00005.1 maker exon 5556014 5556181 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:16
Zjn_sc00005.1 maker exon 5556250 5556493 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:15
Zjn_sc00005.1 maker exon 5556571 5556698 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:14
Zjn_sc00005.1 maker exon 5557097 5557189 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:13
Zjn_sc00005.1 maker exon 5557278 5557373 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:12
Zjn_sc00005.1 maker exon 5557453 5557526 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:11
Zjn_sc00005.1 maker exon 5557605 5557674 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:10
Zjn_sc00005.1 maker exon 5558039 5558148 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:9
Zjn_sc00005.1 maker exon 5558280 5558415 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:8
Zjn_sc00005.1 maker exon 5558492 5558592 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:7
Zjn_sc00005.1 maker exon 5559365 5559485 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:6
Zjn_sc00005.1 maker exon 5559570 5559744 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:5
Zjn_sc00005.1 maker exon 5559842 5560000 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:4
Zjn_sc00005.1 maker exon 5560208 5560321 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:3
Zjn_sc00005.1 maker exon 5560434 5560613 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:2
Zjn_sc00005.1 maker exon 5561709 5561793 . - . ID=Zjn_sc00005.1.g08990.1.am.mkhc:exon:1

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