Z. japonica Nagirizaki
Zjn_sc00005.1.g08910.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G52630.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 86 6e-18 120.2 47.2 66.3
Subject 107 1 86
Annot | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:19514184-19514596 FORWARD LENGTH=107
NR ref|XP_002457577.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 86 2e-30 98.9 75.3 85.4
Subject 88 1 85
Annot hypothetical protein SORBIDRAFT_03g009730 [Sorghum bicolor] gi|241929552|gb|EES02697.1| hypothetical protein SORBIDRAFT_03g009730 [Sorghum bicolor]
IRGSP Os01t0253600-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 86 4e-30 119.1 67.4 79.8
Subject 106 1 85
Annot
Sbicolor Sobic.003G115400.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 89 1 86 1e-33 119.1 75.3 85.4
Subject 106 1 85
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00005.1.g08910.1.sm.mkhc length: 89 aa.
IPR012340 Nucleic acid-binding, OB-fold
method AccNumber shortName E-value location
Gene3D G3DSA:2.40.50.140 no description 6.9e-09 5-84
superfamily SSF50249 Nucleic 6e-10 3-85
IPR013970 Replication factor A protein 3
HMMPfam PF08661 Rep_fac-A_3 1.2e-14 1-86
no_ID  
Seg seg seg NA 21-31
Pseudomolecule
Chromosome Start End Strand
615920231594371+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00005.1 maker exon 5529665 5529672 . - . ID=Zjn_sc00005.1.g08910.1.sm.mkhc:exon:3
Zjn_sc00005.1 maker exon 5531217 5531477 . - . ID=Zjn_sc00005.1.g08910.1.sm.mkhc:exon:2
Zjn_sc00005.1 maker exon 5531949 5532013 . - . ID=Zjn_sc00005.1.g08910.1.sm.mkhc:exon:1

Top