Z. japonica Nagirizaki
Zjn_sc00005.1.g08580.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G59760.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 439 67 365 e-137 97.9 56.3 63.1
Subject 430 99 399
Annot | Symbols: OASC, ATCS-C | O-acetylserine (thiol) lyase isoform C | chr3:22072668-22075345 REVERSE LENGTH=430
NR ref|NP_001140754.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 439 20 366 e-160 90.2 70.2 73.6
Subject 396 17 366
Annot uncharacterized protein LOC100272829 [Zea mays] gi|194700934|gb|ACF84551.1| unknown [Zea mays]
IRGSP Os01t0978100-03_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 439 1 366 e-159 89.7 70.2 74.3
Subject 394 1 364
Annot
Sbicolor Sobic.003G110100.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 439 16 366 e-161 91.6 71.3 75.2
Subject 402 14 372
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00005.1.g08580.1.sm.mkhc length: 439 aa.
IPR001216 Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site
method AccNumber shortName E-value location
Biological Process GO:0006535 cysteine biosynthetic process from serine    
PatternScan PS00901 CYS_SYNTHASE NA 109-127
IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
HMMPfam PF00291 PALP 1.7e-59 83-362
superfamily SSF53686 Tryptophan 2.6e-95 77-366
IPR005856 Cysteine synthase K/M
Molecular Function GO:0004124 cysteine synthase activity    
Biological Process GO:0006535 cysteine biosynthetic process from serine    
HMMTigr TIGR01136 cysKM: 1.3e-126 84-366
IPR005859 Cysteine synthase A
Molecular Function GO:0004124 cysteine synthase activity    
Biological Process GO:0006535 cysteine biosynthetic process from serine    
HMMTigr TIGR01139 cysK: 2.4e-131 84-366
no_ID  
Gene3D G3DSA:3.40.50.1100 no description 7.2e-73 115-211
212-374
HMMPanther PTHR10314 SER/THR 3.3e-181 59-366
HMMPanther PTHR10314:SF8 CYSTEINE 3.3e-181 59-366
Seg seg seg NA 2-17
58-72
249-264
338-356
Pseudomolecule
Chromosome Start End Strand
617057771714640+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00005.1 maker exon 5409396 5409908 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:12
Zjn_sc00005.1 maker exon 5412711 5412806 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:11
Zjn_sc00005.1 maker exon 5413805 5413915 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:10
Zjn_sc00005.1 maker exon 5415679 5415759 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:9
Zjn_sc00005.1 maker exon 5416240 5416299 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:8
Zjn_sc00005.1 maker exon 5416546 5416625 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:7
Zjn_sc00005.1 maker exon 5416706 5416757 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:6
Zjn_sc00005.1 maker exon 5416838 5416975 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:5
Zjn_sc00005.1 maker exon 5417063 5417326 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:4
Zjn_sc00005.1 maker exon 5417493 5417550 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:3
Zjn_sc00005.1 maker exon 5417666 5417775 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:2
Zjn_sc00005.1 maker exon 5418005 5418259 . - . ID=Zjn_sc00005.1.g08580.1.sm.mkhc:exon:1

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