Z. japonica Nagirizaki
Zjn_sc00005.1.g08190.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G62790.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 473 4 473 0.0 100.8 83.5 90.5
Subject 477 3 477
Annot | Symbols: DXR, PDE129 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | chr5:25214358-25217292 REVERSE LENGTH=477
NR ref|XP_004967950.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 473 3 473 0.0 99.8 92.8 96.8
Subject 472 2 472
Annot PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [Setaria italica]
IRGSP Os01t0106900-02_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 473 8 472 0.0 100 89.9 94.3
Subject 473 7 472
Annot
Sbicolor Sobic.003G103300.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 473 3 473 0.0 99.8 92.6 96.8
Subject 472 2 472
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00005.1.g08190.1.sm.mkhc length: 473 aa.
IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase
method AccNumber shortName E-value location
Biological Process GO:0008299 isoprenoid biosynthetic process    
Molecular Function GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
HAMAP MF_00183 DXP_reductoisom 45.629 79-462
HMMPIR PIRSF006205 1-deoxy-D-xylulose 5.4e-243 76-469
HMMPanther PTHR30525 1-DEOXY-D-XYLULOSE 7.4e-232 27-472
HMMTigr TIGR00243 Dxr: 9.9e-161 77-459
IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal
Biological Process GO:0055114 oxidation-reduction process    
Molecular Function GO:0070402 NADPH binding    
HMMPfam PF02670 DXP_reductoisom 1e-47 79-207
IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal
Molecular Function GO:0005515 protein binding    
HMMPfam PF08436 DXP_redisom_C 1.8e-38 221-304
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 2.6e-63 70-225
IPR026877 DXP reductoisomerase C-terminal domain
HMMPfam PF13288 DXPR_C 2e-41 336-459
superfamily SSF69055 1-deoxy-D-xylulose-5-phosphate 5e-31 369-468
no_ID  
Gene3D G3DSA:1.10.1740.10 no description 4.6e-27 382-462
HMMPanther PTHR30525:SF0 1-DEOXY-D-XYLULOSE 7.4e-232 27-472
superfamily SSF51735 NAD(P)-binding 1.5e-50 75-225
superfamily SSF55347 Glyceraldehyde-3-phosphate 3.3e-61 202-339
Pseudomolecule
Chromosome Start End Strand
618604661868069-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00005.1 maker exon 5255967 5256176 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:1
Zjn_sc00005.1 maker exon 5257178 5257359 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:2
Zjn_sc00005.1 maker exon 5257604 5257690 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:3
Zjn_sc00005.1 maker exon 5257866 5257991 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:4
Zjn_sc00005.1 maker exon 5258060 5258122 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:5
Zjn_sc00005.1 maker exon 5258575 5258724 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:6
Zjn_sc00005.1 maker exon 5258936 5259003 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:7
Zjn_sc00005.1 maker exon 5259084 5259195 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:8
Zjn_sc00005.1 maker exon 5259274 5259378 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:9
Zjn_sc00005.1 maker exon 5259583 5259704 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:10
Zjn_sc00005.1 maker exon 5260216 5260362 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:11
Zjn_sc00005.1 maker exon 5261029 5263570 . + . ID=Zjn_sc00005.1.g08190.1.sm.mkhc:exon:12

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