Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00005.1.g07100.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00005.1)

BLAST

TAIR10	AT1G68320.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	321	24	110	3e-17	89.1	16.5	20.9
		Subject	286	18	156
		Annot	\| Symbols: MYB62, AtMYB62, BW62B, BW62C \| myb domain protein 62 \| chr1:25603842-25604884 FORWARD LENGTH=286
NR	ref\|XP_002455261.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	321	1	321	2e-67	121.2	64.8	71
		Subject	389	1	389
		Annot	hypothetical protein SORBIDRAFT_03g007360 [Sorghum bicolor] gi\|241927236\|gb\|EES00381.1\| hypothetical protein SORBIDRAFT_03g007360 [Sorghum bicolor]
IRGSP	Os01t0128000-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	321	1	321	8e-60	109	55.1	63.9
		Subject	350	1	350
		Annot
Sbicolor	Sobic.003G087600.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	321	1	321	2e-70	121.2	64.8	71
		Subject	389	1	389
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001005	SANT/Myb domain
Zjn_sc00005.1.g07100.1.am.mk				length: 321 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003682	chromatin binding
HMMPfam	PF00249	Myb_DNA-binding	4.2e-06	27-58
IPR009057	Homeodomain-like
Molecular Function	GO:0003677	DNA binding
Gene3D	G3DSA:1.10.10.60	no description	1.4e-08	20-56
superfamily	SSF46689	Homeodomain-like	1.4e-07	22-58
IPR017877	Myb-like domain
ProfileScan	PS50090	MYB_LIKE	7.062	22-55
no_ID
HMMPanther	PTHR10641	MYB-LIKE	1.1e-15	21-58
HMMPanther	PTHR10641:SF199SUBFAMILY	NOT	1.1e-15	21-58
Seg	seg	seg	NA	16-27 118-129 162-174 180-194 228-248 273-290

Pseudomolecule

Chromosome	Start	End	Strand
6	2419357	2420726	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00005.1	maker_non_over	exon	4703310	4703497	.	+	.	ID=Zjn_sc00005.1.g07100.1.am.mk:exon:1
Zjn_sc00005.1	maker_non_over	exon	4703581	4703614	.	+	.	ID=Zjn_sc00005.1.g07100.1.am.mk:exon:2
Zjn_sc00005.1	maker_non_over	exon	4703936	4704679	.	+	.	ID=Zjn_sc00005.1.g07100.1.am.mk:exon:3