Z. japonica Nagirizaki
Zjn_sc00005.1.g06620.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G57580.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
443 |
2 |
378 |
8e-89 |
146 |
41.1 |
57.3 |
| Subject |
647 |
12 |
391 |
|
| Annot |
| Symbols: | Calmodulin-binding protein | chr5:23314994-23317683 REVERSE LENGTH=647 |
| NR |
ref|XP_002457419.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
443 |
3 |
443 |
0.0 |
101.8 |
74.5 |
83.3 |
| Subject |
451 |
5 |
451 |
|
| Annot |
hypothetical protein SORBIDRAFT_03g007000 [Sorghum bicolor] gi|241929394|gb|EES02539.1| hypothetical protein SORBIDRAFT_03g007000 [Sorghum bicolor] |
| IRGSP |
Os01t0134700-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
443 |
2 |
443 |
e-178 |
98.9 |
71.3 |
81 |
| Subject |
438 |
3 |
438 |
|
| Annot |
|
| Sbicolor |
Sobic.003G083200.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
443 |
3 |
443 |
0.0 |
101.8 |
74.5 |
83.3 |
| Subject |
451 |
5 |
451 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00005.1.g06620.1.sm.mkhc |
length: 443 aa. |
| IPR012416 |
Calmodulin binding protein-like |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF07887 |
Calmodulin_bind |
3.2e-112 |
84-379 |
| no_ID |
|
| HMMPanther |
PTHR31713 |
FAMILY |
4.4e-131 |
17-441 |
| HMMPanther |
PTHR31713:SF0 |
SUBFAMILY |
4.4e-131 |
17-441 |
| Seg |
seg |
seg |
NA |
392-406 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 6 | 2659204 | 2661306 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00005.1 |
maker |
exon |
4462730 |
4462890 |
. |
- |
. |
ID=Zjn_sc00005.1.g06620.1.sm.mkhc:exon:7 |
| Zjn_sc00005.1 |
maker |
exon |
4463000 |
4463111 |
. |
- |
. |
ID=Zjn_sc00005.1.g06620.1.sm.mkhc:exon:6 |
| Zjn_sc00005.1 |
maker |
exon |
4463195 |
4463389 |
. |
- |
. |
ID=Zjn_sc00005.1.g06620.1.sm.mkhc:exon:5 |
| Zjn_sc00005.1 |
maker |
exon |
4463490 |
4464138 |
. |
- |
. |
ID=Zjn_sc00005.1.g06620.1.sm.mkhc:exon:4 |
| Zjn_sc00005.1 |
maker |
exon |
4464230 |
4464282 |
. |
- |
. |
ID=Zjn_sc00005.1.g06620.1.sm.mkhc:exon:3 |
| Zjn_sc00005.1 |
maker |
exon |
4464384 |
4464459 |
. |
- |
. |
ID=Zjn_sc00005.1.g06620.1.sm.mkhc:exon:2 |
| Zjn_sc00005.1 |
maker |
exon |
4464544 |
4464832 |
. |
- |
. |
ID=Zjn_sc00005.1.g06620.1.sm.mkhc:exon:1 |