Z. japonica Nagirizaki
Zjn_sc00005.1.g05870.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G55440.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
253 |
1 |
253 |
e-119 |
100.4 |
81 |
88.5 |
| Subject |
254 |
1 |
253 |
|
| Annot |
| Symbols: ATCTIMC, TPI, CYTOTPI | triosephosphate isomerase | chr3:20553794-20556078 FORWARD LENGTH=254 |
| NR |
gb|AIN39806.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
253 |
1 |
253 |
e-142 |
100 |
99.2 |
99.2 |
| Subject |
253 |
1 |
253 |
|
| Annot |
hypothetical protein [Zoysia matrella] |
| IRGSP |
Os01t0147900-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
253 |
1 |
253 |
e-134 |
100 |
90.9 |
94.9 |
| Subject |
253 |
1 |
253 |
|
| Annot |
|
| Sbicolor |
Sobic.003G072300.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
253 |
1 |
253 |
e-134 |
100 |
91.7 |
94.9 |
| Subject |
253 |
1 |
253 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00005.1.g05870.1.sm.mkhc |
length: 253 aa. |
| IPR000652 |
Triosephosphate isomerase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004807 |
triose-phosphate isomerase activity |
|
|
| Biological Process |
GO:0008152 |
metabolic process |
|
|
| HMMPanther |
PTHR21139 |
TRIOSEPHOSPHATE |
9.5e-156 |
1-251 |
| HMMPfam |
PF00121 |
TIM |
6.8e-89 |
6-245 |
| HMMTigr |
TIGR00419 |
tim: |
1.9e-102 |
6-240 |
| ProfileScan |
PS51440 |
TIM_2 |
82.334 |
4-247 |
| superfamily |
SSF51351 |
Triosephosphate |
4e-93 |
1-248 |
| IPR013785 |
Aldolase-type TIM barrel |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:3.20.20.70 |
no description |
2.5e-104 |
3-248 |
| IPR020861 |
Triosephosphate isomerase, active site |
| Molecular Function |
GO:0004807 |
triose-phosphate isomerase activity |
|
|
| PatternScan |
PS00171 |
TIM_1 |
NA |
164-174 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
35-47 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 6 | 3023934 | 3027387 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00005.1 |
maker |
exon |
4096649 |
4096822 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:1 |
| Zjn_sc00005.1 |
maker |
exon |
4097366 |
4097441 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:2 |
| Zjn_sc00005.1 |
maker |
exon |
4097570 |
4097693 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:3 |
| Zjn_sc00005.1 |
maker |
exon |
4098025 |
4098109 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:4 |
| Zjn_sc00005.1 |
maker |
exon |
4098442 |
4098574 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:5 |
| Zjn_sc00005.1 |
maker |
exon |
4099199 |
4099293 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:6 |
| Zjn_sc00005.1 |
maker |
exon |
4099442 |
4099520 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:7 |
| Zjn_sc00005.1 |
maker |
exon |
4099601 |
4099683 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:8 |
| Zjn_sc00005.1 |
maker |
exon |
4099813 |
4100102 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05870.1.sm.mkhc:exon:9 |