Z. japonica Nagirizaki
Zjn_sc00005.1.g05830.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT3G55360.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
308 |
1 |
308 |
e-155 |
100.6 |
83.1 |
90.3 |
| Subject |
310 |
1 |
310 |
|
| Annot |
| Symbols: CER10, ECR, ATTSC13, TSC13 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr3:20521186-20522856 REVERSE LENGTH=310 |
| NR |
ref|XP_004968214.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
308 |
1 |
308 |
e-174 |
100.6 |
96.1 |
99.4 |
| Subject |
310 |
1 |
310 |
|
| Annot |
PREDICTED: very-long-chain enoyl-CoA reductase [Setaria italica] |
| IRGSP |
Os01t0150000-02_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
308 |
1 |
308 |
e-173 |
100.6 |
93.8 |
99 |
| Subject |
310 |
1 |
310 |
|
| Annot |
|
| Sbicolor |
Sobic.003G071600.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
308 |
1 |
308 |
e-177 |
146.4 |
95.5 |
99 |
| Subject |
451 |
142 |
451 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00005.1.g05830.1.sm.mk |
length: 308 aa. |
| IPR001104 |
3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005737 |
cytoplasm |
|
|
| Biological Process |
GO:0006629 |
lipid metabolic process |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
|
| HMMPfam |
PF02544 |
Steroid_dh |
2.3e-27 |
159-307 |
| ProfileScan |
PS50244 |
S5A_REDUCTASE |
22.448 |
199-280 |
| no_ID |
|
| HMMPanther |
PTHR10556 |
3-OXO-5-ALPHA-STEROID |
1.4e-137 |
1-308 |
| HMMPanther |
PTHR10556:SF28 |
ENOYL |
1.4e-137 |
1-308 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 6 | 3040831 | 3044514 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00005.1 |
maker_non_over |
exon |
4079522 |
4079590 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05830.1.sm.mk:exon:1 |
| Zjn_sc00005.1 |
maker_non_over |
exon |
4079742 |
4079781 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05830.1.sm.mk:exon:2 |
| Zjn_sc00005.1 |
maker_non_over |
exon |
4082304 |
4083052 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05830.1.sm.mk:exon:3 |
| Zjn_sc00005.1 |
maker_non_over |
exon |
4083137 |
4083205 |
. |
+ |
. |
ID=Zjn_sc00005.1.g05830.1.sm.mk:exon:4 |