Z. japonica Nagirizaki
Zjn_sc00005.1.g03310.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G55110.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 432 1 417 1e-98 105.3 50.5 61.3
Subject 455 1 443
Annot | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain 7 | chr1:20560406-20562625 REVERSE LENGTH=455
NR gb|EAY72878.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 432 1 432 e-160 112.7 76.9 85.9
Subject 487 1 487
Annot hypothetical protein OsI_00752 [Oryza sativa Indica Group]
IRGSP Os01t0195000-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 432 1 432 e-160 112.7 76.6 85.9
Subject 487 1 487
Annot
Sbicolor Sobic.003G031800.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 432 1 432 e-148 115.3 77.1 81.9
Subject 498 1 498
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00005.1.g03310.1.sm.mk length: 432 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 75-95
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.822 73-95
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 3.3e-05 73-95
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 2.5e+02 73-95
115-145
150-170
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 6.5e-132 1-291
HMMPanther PTHR10593:SF17 SUBFAMILY 6.5e-132 1-291
Seg seg seg NA 6-17
204-220
280-306
326-359
superfamily SSF57667 C2H2 5.5e-05 132-176
55-96
Pseudomolecule
Chromosome Start End Strand
644053984406902+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00005.1 maker_non_over exon 2717134 2717860 . - . ID=Zjn_sc00005.1.g03310.1.sm.mk:exon:3
Zjn_sc00005.1 maker_non_over exon 2717950 2718361 . - . ID=Zjn_sc00005.1.g03310.1.sm.mk:exon:2
Zjn_sc00005.1 maker_non_over exon 2718479 2718638 . - . ID=Zjn_sc00005.1.g03310.1.sm.mk:exon:1

Top