Z. japonica Nagirizaki
Zjn_sc00005.1.g02740.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G06170.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 362 172 359 1e-39 116 22.7 35.9
Subject 420 221 400
Annot | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1885146-1886564 REVERSE LENGTH=420
NR ref|XP_004967599.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 362 17 362 e-125 98.3 74.6 79
Subject 356 1 356
Annot PREDICTED: transcription factor TIP2-like [Setaria italica]
IRGSP Os01t0293100-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 362 17 362 e-125 104.7 69.3 77.1
Subject 379 1 379
Annot
Sbicolor Sobic.003G140100.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 362 17 362 e-123 104.7 73.8 78.2
Subject 379 1 379
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00005.1.g02740.1.sm.mk length: 362 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 1.7e-07 172-234
HMMPfam PF00010 HLH 1.8e-06 170-212
HMMSmart SM00353 helix 1.9e-05 169-218
ProfileScan PS50888 BHLH 10.722 163-212
superfamily SSF47459 HLH, 3.1e-09 172-245
no_ID  
Coil coil coiled-coil NA 209-230
HMMPanther PTHR11514 MYC 1.8e-14 172-362
HMMPanther PTHR11514:SF8 EGL3 1.8e-14 172-362
Seg seg seg NA 54-68
235-246
Pseudomolecule
Chromosome Start End Strand
648367564839164-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00005.1 maker_non_over exon 2284872 2284884 . + . ID=Zjn_sc00005.1.g02740.1.sm.mk:exon:1
Zjn_sc00005.1 maker_non_over exon 2284987 2285009 . + . ID=Zjn_sc00005.1.g02740.1.sm.mk:exon:2
Zjn_sc00005.1 maker_non_over exon 2285948 2286496 . + . ID=Zjn_sc00005.1.g02740.1.sm.mk:exon:3
Zjn_sc00005.1 maker_non_over exon 2286607 2287038 . + . ID=Zjn_sc00005.1.g02740.1.sm.mk:exon:4
Zjn_sc00005.1 maker_non_over exon 2287209 2287280 . + . ID=Zjn_sc00005.1.g02740.1.sm.mk:exon:5

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