Z. japonica Nagirizaki
Zjn_sc00005.1.g02270.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G47460.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 254 13 56 3e-11 146.1 11.4 13.4
Subject 371 89 132
Annot | Symbols: MYB12, ATMYB12, PFG1 | myb domain protein 12 | chr2:19476438-19479242 FORWARD LENGTH=371
NR ref|XP_004967542.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 254 1 254 8e-49 133.9 57.5 67.7
Subject 340 77 340
Annot PREDICTED: myb-related protein P-like [Setaria italica]
IRGSP Os01t0305900-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 254 1 254 1e-42 124.8 52 62.2
Subject 317 77 317
Annot
Sbicolor Sobic.003G145100.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 254 1 254 6e-37 169.3 53.5 64.2
Subject 430 146 430
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00005.1.g02270.1.sm.mk length: 254 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 2.4e-06 13-36
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 2.7e-11 13-36
superfamily SSF46689 Homeodomain-like 2.2e-06 13-50
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 13.626 1-40
no_ID  
HMMPanther PTHR10641 MYB-LIKE 7.3e-15 13-39
HMMPanther PTHR10641:SF203SUBFAMILY NOT 7.3e-15 13-39
Seg seg seg NA 65-88
105-117
Pseudomolecule
Chromosome Start End Strand
651085505109439+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00005.1 maker_non_over exon 2014597 2015326 . - . ID=Zjn_sc00005.1.g02270.1.sm.mk:exon:2
Zjn_sc00005.1 maker_non_over exon 2015452 2015486 . - . ID=Zjn_sc00005.1.g02270.1.sm.mk:exon:1

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